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✨ New SiDB simulator QuickExact and simulation of atomic defects. #203

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99c93d5
:art: ClangFormat changes
Apr 25, 2023
2487fc5
Merge remote-tracking branch 'origin/sidb_temperature_simulation' int…
Drewniok Apr 25, 2023
e5a6354
:art: copy enum class to try to solve window build issue.
Drewniok Apr 25, 2023
41a3bd8
:art: tiny change in docu.
Drewniok Apr 25, 2023
7109965
:art: ClangFormat changes
Apr 25, 2023
6703758
:twisted_rightwards_arrows: merge.
Drewniok Apr 25, 2023
926dd95
:art: ClangFormat changes
Apr 25, 2023
016f682
Merge branch 'main' into fast_three_state
Drewniok Apr 26, 2023
0dca9cf
Merge branch 'marcelwa:main' into main
Drewniok Apr 26, 2023
79025b5
Merge branch 'main' into fast_three_state
Drewniok Apr 26, 2023
e824429
:fire: remove file from git.
Drewniok Apr 26, 2023
0286d6e
:white_check_mark: add additional test.
Drewniok Apr 26, 2023
072e5ff
:bug: add ``recompute_energy`` and test which failed before.
Drewniok Apr 26, 2023
ff785b1
:art: change to scoped enumerator.
Drewniok Apr 26, 2023
e67ed41
:art: ClangFormat changes
Apr 26, 2023
ab1497b
:art: use enum struct.
Drewniok Apr 26, 2023
14e2946
Merge remote-tracking branch 'origin/sidb_temperature_simulation' int…
Drewniok Apr 26, 2023
e173661
:fire: remove ``enum class``due to windows CI issue.
Drewniok Apr 26, 2023
1d7534d
:art: ClangFormat changes
Apr 26, 2023
c240099
:art: replace reference.
Drewniok Apr 26, 2023
a5ab4a5
Merge remote-tracking branch 'origin/sidb_temperature_simulation' int…
Drewniok Apr 26, 2023
5b41713
:sparkles: code to generate unique random layouts.
Drewniok Apr 26, 2023
69f3119
:sparkles: Temperature-aware simulation can be conducted with ``exgs`…
Drewniok Apr 27, 2023
efa5e46
:art: ClangFormat changes
Apr 27, 2023
f63d9cf
:art: rename struct member.
Drewniok Apr 27, 2023
1f6f0b6
:art: activate automatic state count detection.
Drewniok Apr 27, 2023
c583c68
Merge branch 'main' into sidb_temperature_simulation
Drewniok May 1, 2023
582554d
:art: update after review (main change: replace stats_pointer as inpu…
Drewniok May 1, 2023
ebf7925
Merge branch 'main' into sidb_temperature_simulation
Drewniok May 1, 2023
ce8b2e2
Merge branch 'marcelwa:main' into main
Drewniok May 1, 2023
40b4f77
:art: ClangFormat changes
May 1, 2023
b3c886d
:art: introduce impl_class for quickexact.
Drewniok May 2, 2023
88815fc
:twisted_rightwards_arrows: merge ``sidb_temperature_simulation`` in …
Drewniok May 2, 2023
fb734f2
:art: remove ``const``keyword.
Drewniok May 2, 2023
cbb9a41
Merge branch 'temperature_simulation_fetched' into fast_three_state
Drewniok May 2, 2023
e741662
:art: add ``const``keyword.
Drewniok May 3, 2023
0361150
Merge branch 'temperature_simulation_fetched' into fast_three_state
Drewniok May 3, 2023
5dcdd73
:art: split in several smaller functions.
Drewniok May 3, 2023
a948f76
:art: rename some functions.
Drewniok May 3, 2023
e1d14b8
:memo: add docu.
Drewniok May 3, 2023
3c7c91e
:sparkles: automatic base number detection can be turned ``on`` and `…
Drewniok May 4, 2023
cc7b8d8
:memo: add more documentation.
Drewniok May 4, 2023
d5872de
:fire: remove files to shift it to separate PR.
Drewniok May 4, 2023
ea5f152
:art: change order of ``const``keyword and type.
Drewniok May 4, 2023
767eb31
Merge branch 'temperature_simulation_fetched' into fast_three_state
Drewniok May 4, 2023
bb69495
:memo: add RST.
Drewniok May 4, 2023
a553966
:memo: add documentation.
Drewniok May 5, 2023
9135e60
:green_heart: add ``const`` keyword.
Drewniok May 5, 2023
853fbfe
:art: smaller changes to try to fix test issue.
Drewniok May 5, 2023
915a90f
:white_check_mark: small change to avoid windows issue.
Drewniok May 5, 2023
862e716
:memo: add documentation.
Drewniok May 5, 2023
bd077aa
:memo: add documentation.
Drewniok May 10, 2023
a00c212
Merge branch 'main' into fast_three_state
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64501c1
Merge branch 'marcelwa:main' into main
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b9656d9
Merge branch 'main' into fast_three_state
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68f6885
Merge branch 'marcelwa:main' into main
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84634cd
Merge branch 'marcelwa:main' into main
Drewniok May 12, 2023
441dce3
Merge branch 'main' into fast_three_state
Drewniok May 12, 2023
f44157d
:twisted_rightwards_arrows: merge with temperature-branch.
Drewniok May 12, 2023
c677422
:art: small changes here and there (documentation, remove header, etc.)
Drewniok May 12, 2023
597b1a7
Merge branch 'marcelwa:main' into main
Drewniok May 12, 2023
6481a84
Merge branch 'main' into fast_three_state
Drewniok May 12, 2023
c96be08
:fire: remove additional function.
Drewniok May 14, 2023
1920794
Merge branch 'marcelwa:main' into main
Drewniok May 14, 2023
70e64c9
Merge remote-tracking branch 'origin/fast_three_state' into fast_thre…
Drewniok May 14, 2023
4f2b0e6
Merge branch 'main' into fast_three_state
Drewniok May 14, 2023
c242f9b
:art: reformat code.
Drewniok May 15, 2023
69fa1e8
:art: add equal sign.
Drewniok May 15, 2023
a785434
:art: clang-tidy suggestions.
Drewniok May 15, 2023
5d74ac6
Merge branch 'marcelwa:main' into main
Drewniok May 21, 2023
f408962
Merge branch 'marcelwa:main' into main
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b4138de
Merge branch 'marcelwa:main' into main
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930fcf2
Merge branch 'marcelwa:main' into main
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8fc1e3b
Merge branch 'main' into fast_three_state
Drewniok Jun 5, 2023
e125f27
:art: fix a few typo.
Drewniok Jun 5, 2023
f678e40
:art: renaming and put ``stats`` as last.
Drewniok Jun 6, 2023
4e38871
:art: implement Marcel's first comments.
Drewniok Jun 6, 2023
58566ee
:art: add enum classes to make use of functions friendlier.
Drewniok Jun 6, 2023
83ed772
:art: add enum class for both exhaustive simulators.
Drewniok Jun 6, 2023
2cdc9ed
:fire: remove ``this``.
Drewniok Jun 6, 2023
021df7a
:art: only one enum class in enum_class_exhaustive_algorithm.hpp
Drewniok Jun 6, 2023
d818c3f
:art: simulation_result is added as an attribute.
Drewniok Jun 6, 2023
3fc0726
:art: replace keyword ``set`` by ``assign`` to be consistent.
Drewniok Jun 6, 2023
c97b019
:art: take order of member function from the ``pyml`` branch.
Drewniok Jun 6, 2023
cbd8345
Merge branch 'marcelwa:main' into main
Drewniok Jun 7, 2023
7edd877
:sparkles: add the equality and inequality operator.
Drewniok Jun 7, 2023
475b1c8
:white_check_mark: add test for the equality and inequality operator.
Drewniok Jun 7, 2023
8556973
:art: use ``sidb_surface`` to store defects.
Drewniok Jun 7, 2023
2147968
Merge branch 'main' into fast_three_state
Drewniok Jun 7, 2023
2903532
Merge branch 'marcelwa:main' into main
Drewniok Jun 12, 2023
f70ceb6
Merge branch 'marcelwa:main' into main
Drewniok Jun 14, 2023
0932c41
:art: add test.
Drewniok Jun 14, 2023
24ff3a7
Merge branch 'marcelwa:main' into main
Drewniok Jun 16, 2023
aff9b24
Merge branch 'main' into fast_three_state
Drewniok Jun 16, 2023
e00269f
:art: reformat code.
Drewniok Jun 16, 2023
a4f3150
Merge branch 'marcelwa:main' into main
Drewniok Jun 19, 2023
5c94467
Merge branch 'main' into fast_three_state
Drewniok Jun 19, 2023
9b7f0a3
:bug: correct wrong unit test.
Drewniok Jun 19, 2023
3c2add8
:art: change unit test.
Drewniok Jun 19, 2023
7c58497
:sparkles: added avoidance distance simulation.
Drewniok Jun 22, 2023
fbed04c
:sparkles: bounding box for siqad layout.
Drewniok Jun 22, 2023
0138858
:sparkles: function to determine the defect influence distance.
Drewniok Jun 22, 2023
9c78984
Merge branch 'marcelwa:main' into main
Drewniok Jun 23, 2023
90414a0
:art: more defect places added.
Drewniok Jun 23, 2023
0a48161
:art: sort sidbs in the charge distribution surface at the initializa…
Drewniok Jun 26, 2023
82661ba
:art: add parameter struct.
Drewniok Jun 26, 2023
1f2fdce
:white_check_mark: add tests for the defect_influence_distance function.
Drewniok Jun 26, 2023
d489dd9
:art: add new type.
Drewniok Jun 26, 2023
cf7367a
Merge branch 'main' into fast_three_state
Drewniok Jun 26, 2023
420679e
:bug: add WithinAbs in unit test.
Drewniok Jun 26, 2023
66688c6
:bug: delete Check for negative indices.
Drewniok Jun 26, 2023
67a32fc
:bug: small bug fix.
Drewniok Jun 27, 2023
adb3c63
:bug: add previously deleted cells to layout.
Drewniok Jun 27, 2023
c3f4e96
Merge branch 'marcelwa:main' into main
Drewniok Jun 28, 2023
853be74
Merge branch 'cda-tum:main' into main
Drewniok Jul 5, 2023
13eab3c
Merge branch 'cda-tum:main' into main
Drewniok Jul 10, 2023
205291b
:sparkles: Multithreading for defect avoidance simulation.
Drewniok Jul 14, 2023
7a9def6
:art: add lambda caption.
Drewniok Jul 18, 2023
1c59a58
Merge branch 'cda-tum:main' into main
Drewniok Jul 18, 2023
1f87c22
Merge branch 'cda-tum:main' into main
Drewniok Jul 20, 2023
e308ef8
Merge branch 'main' into fast_three_state
Drewniok Jul 20, 2023
ae6888b
:twisted_rightwards_arrows: merge ``main``. Unit library is new.
Drewniok Jul 21, 2023
b5e1da6
:art: adapting code for unit library.
Drewniok Jul 21, 2023
6bd8335
:art: adapt sidb defects to unit library.
Drewniok Jul 21, 2023
29a69f2
:art: adapt sidb defects to unit library.
Drewniok Jul 21, 2023
5c73a57
Merge branch 'defect_unit_library' into fast_three_state
Drewniok Jul 21, 2023
74e8928
:art: implement unit library to code.
Drewniok Jul 21, 2023
dc55796
:art: implement unit library to code.
Drewniok Jul 21, 2023
d300bc1
Merge branch 'cda-tum:main' into main
Drewniok Jul 24, 2023
c45aa99
:art: integrate unit library.
Drewniok Jul 24, 2023
9a328fa
Merge branch 'main' into fast_three_state
Drewniok Jul 24, 2023
af76e19
:art: all unit test run successfully.
Drewniok Jul 24, 2023
5cb20c7
:art: small changes, trying to improve performance.
Drewniok Jul 24, 2023
2dc75ac
Merge branch 'cda-tum:main' into main
Drewniok Jul 25, 2023
2f6990e
:heavy_minus_sign: Remove ``unit`` library due to increasing simulati…
Drewniok Jul 25, 2023
ce63b2d
:art: implement Marcel's suggestions.
Drewniok Jul 25, 2023
ab73daa
Merge branch 'main' into remove_unit_library
Drewniok Jul 25, 2023
0cb32e2
:white_check_mark: add a few more tests.
Drewniok Jul 25, 2023
cbf75c2
Merge branch 'main' into fast_three_state
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9fc5819
Merge branch 'cda-tum:main' into main
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8d58695
Merge branch 'main' into remove_unit_library
Drewniok Jul 26, 2023
2f8650a
:white_check_mark: add a few more tests.
Drewniok Jul 26, 2023
cbfd028
Merge branch 'remove_unit_library' into fast_three_state
Drewniok Jul 26, 2023
6f5e9be
:white_check_mark: remove ``unit library``.
Drewniok Jul 26, 2023
97123ba
:memo: more documentation (add physical unit information).
Drewniok Jul 26, 2023
bd5cfc3
Merge branch 'cda-tum:main' into main
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22d93da
:memo: add docu.
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4421776
:white_check_mark: All tests run successfully.
Drewniok Jul 26, 2023
2d54ba6
Merge branch 'main' into fast_three_state
Drewniok Jul 26, 2023
b331e1f
:bug: add time_to_solution unit test again, issue caused by github me…
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51b93cb
Merge branch 'cda-tum:main' into main
Drewniok Jul 26, 2023
f6a98f3
:art: remove redundant unit test case.
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fda1125
Merge branch 'main' into fast_three_state
Drewniok Jul 26, 2023
7983d54
:art: change ``CHECK`` for defect position due to symmetry.
Drewniok Jul 26, 2023
8dcfe25
:bug: wrong cell where ``get_local_potential`` is applied.
Drewniok Jul 26, 2023
163fa00
:art: reformat code.
Drewniok Jul 26, 2023
f1ec086
:white_check_mark: add unit test.
Drewniok Jul 26, 2023
66b2d19
:art: Structural improvements and consistency fixes for the code of t…
marcelwa Jul 31, 2023
9fc79a9
Merge remote-tracking branch 'origin/fast_three_state' into fast_thre…
Drewniok Aug 2, 2023
5727ac6
:art: rename function.
Drewniok Aug 3, 2023
751369c
Merge branch 'cda-tum:main' into main
Drewniok Aug 3, 2023
d9193e3
Merge branch 'main' into fast_three_state
Drewniok Aug 3, 2023
eb12b2a
:twisted_rightwards_arrows: merge ``main``.
Drewniok Aug 3, 2023
1659e4f
:white_check_mark: add more unit tests.
Drewniok Aug 4, 2023
9f909c9
:white_check_mark: add more unit tests to cover different physical pa…
Drewniok Aug 4, 2023
af9f06d
:art: delete redundant line of code.
Drewniok Aug 9, 2023
311339b
Merge branch 'cda-tum:main' into main
Drewniok Aug 10, 2023
8c9d164
:sparkles: function to determine whether positive charges can occur i…
Drewniok Aug 12, 2023
16c12e4
Merge branch 'cda-tum:main' into main
Drewniok Aug 27, 2023
7bf37f3
:art: add pre-mature break.
Drewniok Aug 27, 2023
5953198
:sparkles: finish function to detect if SiDBs can be positively charged.
Drewniok Aug 28, 2023
a4854ac
:art: more generic description.
Drewniok Aug 28, 2023
668ad34
:art: code cleaning.
Drewniok Aug 28, 2023
113e48a
:art: code cleanup.
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2371a61
:art: code cleanup.
Drewniok Aug 28, 2023
0054e36
:white_check_mark: correct bug in test.
Drewniok Aug 28, 2023
1b3a00a
:art: if statement over several statements.
Drewniok Aug 28, 2023
1b492d4
:bug: Wrong cell whose local potential is accessed.
Drewniok Aug 29, 2023
4ee06d4
:bug: remove runtime test due to issues in debug mode.
Drewniok Aug 29, 2023
2d85997
Merge branch 'main' into fast_three_state
Drewniok Aug 29, 2023
b11c732
:art: delete cout.
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9f4426b
Merge branch 'cda-tum:main' into main
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Drewniok Aug 29, 2023
9c84a29
:bug: make sure that defects, if any, are included in the simulation …
Drewniok Aug 29, 2023
1e99837
:white_check_mark: add test to check if defects are included in the s…
Drewniok Aug 29, 2023
6eccd58
Merge branch 'cda-tum:main' into main
Drewniok Aug 30, 2023
00e7add
:white_check_mark: Gray code iterator to iterate from a start integer…
Drewniok Aug 30, 2023
5974af0
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Drewniok Aug 30, 2023
05d81af
:memo: add docu.
Drewniok Aug 30, 2023
da9342e
:art: add postfix increment operator.
Drewniok Aug 30, 2023
198abda
:art: remove ambiguous operators.
Drewniok Aug 30, 2023
fcf197e
:art: use ``QuickExact`` for temperature simulation.
Drewniok Aug 30, 2023
77206e9
:art: implement suggestions and add docu.
Drewniok Aug 30, 2023
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Merge branch 'cda-tum:main' into main
Drewniok Aug 30, 2023
42fd13e
:art: implement suggestions.
Drewniok Aug 30, 2023
44b1769
:art: use pair for additional_scanning_area.
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Merge branch 'main' into fast_three_state
Drewniok Aug 30, 2023
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:art: remove unnecessary ``if`` statement and add tests.
Drewniok Aug 30, 2023
31a7327
:art: add atomic header.
Drewniok Aug 31, 2023
812fca8
:art: remove atomic again.
Drewniok Aug 31, 2023
1a6b74c
:art: wrong data type.
Drewniok Aug 31, 2023
66b2ce3
:memo: add more docu.
Drewniok Aug 31, 2023
0d0a001
:white_check_mark: add test.
Drewniok Aug 31, 2023
ed016bc
:white_check_mark: implement ``clang-tidy``.
Drewniok Sep 1, 2023
fc06e61
:white_check_mark: add more test.
Drewniok Sep 1, 2023
89bc9ae
Merge branch 'cda-tum:main' into main
Drewniok Sep 1, 2023
081cc0a
Merge branch 'main' into fast_three_state
Drewniok Sep 1, 2023
8ee67bc
:art: implement ``clang-tidy`` suggestions.
Drewniok Sep 1, 2023
7c7b6f0
:white_check_mark: add more tests.
Drewniok Sep 3, 2023
d3d6649
:bug: wrong function call.
Drewniok Sep 3, 2023
01c3df2
:white_check_mark: add more tests.
Drewniok Sep 4, 2023
dde48d3
:white_check_mark: add more test.
Drewniok Sep 4, 2023
b85f1d5
:art: add test and fix inconsistency.
Drewniok Sep 5, 2023
64c4862
Merge branch 'cda-tum:main' into main
Drewniok Sep 5, 2023
89e4168
Merge branch 'main' into fast_three_state
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ec29d9c
Merge branch 'main' into fast_three_state
marcelwa Sep 5, 2023
5c4b856
Merge branch 'main' into fast_three_state
Drewniok Sep 5, 2023
c7fab2b
:art: split ``maximal_defect_influence_distance`` into smaller functi…
Drewniok Sep 5, 2023
c06bf45
:memo: add ``maximal_defect_influence_distance`` to docu.
Drewniok Sep 5, 2023
b8bd848
:art: replace wrong function and add unit test.
Drewniok Sep 5, 2023
62ceedb
:memo: update docu.
Drewniok Sep 5, 2023
e01ec80
Merge branch 'main' into fast_three_state
Drewniok Sep 5, 2023
4817da7
:art: reformat code, simplify code, and add more unit tests.
Drewniok Sep 6, 2023
45cdcfd
Merge branch 'main' into fast_three_state
Drewniok Sep 6, 2023
9f01017
:art: solve ``bitwise '|' with boolean operands`` warning.
Drewniok Sep 6, 2023
f9d37af
:art: compare float with ``CHECK_THAT``.
Drewniok Sep 6, 2023
593acfd
:art: fix inconsistency.
Drewniok Sep 6, 2023
9d45e28
:art: fix inconsistency and add test.
Drewniok Sep 6, 2023
799632e
:art: fix inconsistency.
Drewniok Sep 6, 2023
606f338
:art: reformat code.
Drewniok Sep 6, 2023
72b35c6
:art: reformat code.
Drewniok Sep 6, 2023
00477b3
:art: implement Marcel's suggestions.
Drewniok Sep 7, 2023
cb0810a
:art: implement Marcel's suggestions and reformat code.
Drewniok Sep 7, 2023
45f332b
:art: implement Marcel's suggestions and reformat code.
Drewniok Sep 7, 2023
547099a
:art: implement Marcel's suggestions and reformat code.
Drewniok Sep 7, 2023
a48ee60
:art: implement Marcel's suggestions and reformat code.
Drewniok Sep 7, 2023
e8d666a
:art: rename ``maximal`` to ``maximum``.
Drewniok Sep 7, 2023
b9d440f
:memo: rename ``maximal`` to ``maximum``.
Drewniok Sep 7, 2023
ab4e79d
:art: implement ``clang-tidy``suggestions and use ``std::for_each`` i…
Drewniok Sep 7, 2023
4dd833c
:art: reformat code.
Drewniok Sep 7, 2023
1b9a27e
Merge branch 'main' into fast_three_state
Drewniok Sep 8, 2023
faeb076
:art: implement cppcheck warnings.
Drewniok Sep 8, 2023
334990d
:art: implement Marcel's suggestions.
Drewniok Sep 8, 2023
99a8fc0
Merge branch 'main' into fast_three_state
Drewniok Sep 8, 2023
5ef8fb1
:art: update sidb_simulation.rst
Drewniok Sep 8, 2023
8764fe9
:art: use template again.
Drewniok Sep 8, 2023
540ca1e
:art: implement clang-tidy suggestions.
Drewniok Sep 10, 2023
348d37f
:art: remove ``std::move``
Drewniok Sep 10, 2023
5526e92
:art: implement ``clang-tidy`` suggestions.
Drewniok Sep 11, 2023
40f9578
:art: Implement ``clang-tidy`` suggestions.
Drewniok Sep 11, 2023
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9 changes: 9 additions & 0 deletions docs/algorithms/iterators.rst
Original file line number Diff line number Diff line change
Expand Up @@ -5,3 +5,12 @@ Aspect Ratio Iterator

.. doxygenclass:: fiction::aspect_ratio_iterator
:members:


Gray Code Iterator
------------------

**Header:** ``fiction/algorithms/iter/gray_code_iterator.hpp``

.. doxygenclass:: fiction::gray_code_iterator
:members:
26 changes: 22 additions & 4 deletions docs/algorithms/sidb_simulation.rst
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@@ -1,8 +1,7 @@
SiDB Electrostatic Ground State Simulation
------------------------------------------
Physical Simulation of Silicon Dangling Bond Logic
--------------------------------------------------

These headers provide functions for physically simulating the *ground state* of an SiDB layout. Ground state simulations
are a crucial step in the physical design flow of SiDB layouts, as they are used to validate their functionality.
These headers provide functions for physically simulating an SiDB layout, which is a crucial step in the physical design flow of SiDB layouts, as they are used to validate their functionality.


Physical Parameters
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Exhaustive Ground State Simulation
##################################

**Header:** ``fiction/algorithms/simulation/sidb/quickexact.hpp``

.. doxygenenum:: fiction::automatic_base_number_detection
.. doxygenstruct:: fiction::quickexact_params
:members:
.. doxygenfunction:: fiction::quickexact

**Header:** ``fiction/algorithms/simulation/sidb/exhaustive_ground_state_simulation.hpp``

.. doxygenfunction:: fiction::exhaustive_ground_state_simulation
Expand Down Expand Up @@ -87,12 +93,24 @@ Temperature Behavior
.. doxygenfunction:: fiction::calculate_energy_and_state_type


Maximum Defect Influence Distance
#################################

**Header:** ``fiction/algorithms/simulation/sidb/maximum_defect_influence_position_and_distance.hpp``

.. doxygenstruct:: fiction::maximum_defect_influence_distance_params
:members:
.. doxygenfunction:: fiction::maximum_defect_influence_position_and_distance


Time-to-Solution (TTS) Statistics
#################################

**Header:** ``fiction/algorithms/simulation/sidb/time_to_solution.hpp``

.. doxygenenum:: fiction::exhaustive_algorithm
.. doxygenstruct:: fiction::time_to_solution_params
:members:
.. doxygenfunction:: fiction::sim_acc_tts


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