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[r] cache most R dependencies to speed up r-check CI #517

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Jun 5, 2023
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[r] cache most R dependencies to speed up r-check CI #517

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11 changes: 6 additions & 5 deletions .github/workflows/r-check.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,11 +20,12 @@ jobs:
with:
working-directory: ./api/r/cellxgene.census
extra-packages: any::rcmdcheck, any::styler, any::roxygen2
needs: check
# Disable dependency caching so long as we depend on bleeding-edge
# builds of tiledbsoma from r-universe. Its DESCRIPTION version
# number isn't routinely updated to invalidate our cache.
cache: false
cache: true
- name: install tiledbsoma & tiledb from tiledb-inc.r-universe.dev
# Install the latest tiledb[soma] package, overwriting any version cached by
# setup-r-dependencies. FIXME once we have a strategy for
# https://github.com/single-cell-data/TileDB-SOMA/issues/1427
run: Rscript -e 'install.packages(c("tiledb", "tiledbsoma"), repos = "https://tiledb-inc.r-universe.dev")'
- name: styler
run: Rscript -e 'library("styler"); style_pkg("api/r/cellxgene.census", dry="fail")'
- name: check session info
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