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fix: update markdown images #2702

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fix: update markdown images #2702

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0bff552
fix: update markdown images
kaloster Sep 13, 2024
ca8435d
Merge branch 'main' into kaloster/various-fixes
kaloster Sep 13, 2024
5b48c7a
debug
kaloster Sep 13, 2024
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11 changes: 8 additions & 3 deletions .github/workflows/compatibility_tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,10 @@ on:
branches:
- main

# For debug - uncomment below to run on all PRs
pull_request:
branches: "*"

env:
JEST_ENV: prod

Expand All @@ -28,13 +32,14 @@ jobs:
strategy:
fail-fast: false
matrix:
# note: The `macos-latest` is latest Catalina version, and not Big Sur. So we explicitly ask for Big Sur (`macos-11`)
os: [ubuntu-latest, macos-latest, macos-13]
python-version: ["3.10", "3.11", "3.12"]
python-version: ["3.10", "3.11"]
cellxgene_build: [main, latest]
# add anndata pinned version test for subset of matrix configurations,
# in order to reduce matrix cross-product explosion
include:
- python-version: 3.12
- python-version: 3.11
cellxgene_build: latest
# TODO: dynamically use the literal version in requirements.txt,
# to avoid having to update this in manually in the future
Expand Down Expand Up @@ -95,7 +100,7 @@ jobs:
# keep same pip pkg versions as in the cxg release
sed -i'' -e 's/-r requirements.txt//' server/requirements-dev.txt
pip install -r server/requirements-dev.txt
pip install --force-reinstall numpy==2.0.1 numba>=0.60.0 pandas flatbuffers==2.0.7
pip install --force-reinstall numpy==2.0.1 numba>=0.60.0 pandas
- name: Install anndata version per matrix variable
run: pip install anndata${{ matrix.anndata_version }}
- name: Install node
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7 changes: 4 additions & 3 deletions README.md
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<img src="./docs/cellxgene-logo.png" width="300">
![](https://github.com/chanzuckerberg/cellxgene/raw/main/docs/cellxgene-logo.png)

_an interactive explorer for single-cell transcriptomics data_

Expand All @@ -11,7 +11,8 @@ CZ CELLxGENE Annotate (pronounced "cell-by-gene") is an interactive data explore

Whether you need to visualize one thousand cells or one million, CELLxGENE Annotate helps you gain insight into your single-cell data.

<img src="https://github.com/chanzuckerberg/cellxgene/raw/main/docs/images/crossfilter.gif" width="350" height="200" hspace="30"><img src="https://github.com/chanzuckerberg/cellxgene/raw/main/docs/images/category-breakdown.gif" width="350" height="200" hspace="30">
![](https://github.com/chanzuckerberg/cellxgene/raw/main/docs/images/crossfilter.gif)
![](https://github.com/chanzuckerberg/cellxgene/raw/main/docs/images/category-breakdown.gif)

# Getting started

Expand All @@ -27,7 +28,7 @@ Whether you need to visualize one thousand cells or one million, CELLxGENE Annot

### Quick start

To install CELLxGENE Annotate you need Python 3.10+. We recommend [installing Annotate into a conda or virtual environment.](https://github.com/chanzuckerberg/cellxgene-documentation/blob/main/desktop/install.md)
_To install CELLxGENE Annotate you need Python 3.10+_. We recommend [installing Annotate into a conda or virtual environment.](https://github.com/chanzuckerberg/cellxgene-documentation/blob/main/desktop/install.md)

Install the package.

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