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51 Open 385 Closed
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Issues list

is_primary_data review & revision curation Updates to published datasets
#1092 opened Nov 6, 2024 by jahilton
@jahilton
1
Draft Microcebus murinus (gray mouse lemur) drafting drafting schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1091 opened Nov 5, 2024 by brianraymor
cellxgene-schema CLI is not correctly enforcing obs['is_primary_data'] bug Something isn't working curation software dp Data Platform Team work
#1076 opened Oct 30, 2024 by brianraymor
1
Address datasets with orthologous gene references multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1074 opened Oct 28, 2024 by brianraymor
@brianraymor
3
Discovery for Productionalizing Multi-Species Validator Epic
#1058 opened Oct 22, 2024 by nayib-jose-gloria
Consider if the COG builder should only parse for certain subtrees of ontologies that CxG cares about P2
#1057 opened Oct 22, 2024 by nayib-jose-gloria
Investigate installing COG with only ontologies users are interested in P2
#1056 opened Oct 22, 2024 by nayib-jose-gloria
Investigate integrating a more flexible, established third-party validation tool P1
#1055 opened Oct 22, 2024 by nayib-jose-gloria
Package experimental validator CLI such that user can easily install + validate against their desired schema
#1054 opened Oct 22, 2024 by nayib-jose-gloria
Dataset MUST NOT contain duplicate obs, by raw counts 5.4 Next minor CELLxGENE schema version after 5.3 schema CELLxGENE Discover dataset schema
#1037 opened Oct 17, 2024 by jahilton
Draft "General species" requirements multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1036 opened Oct 15, 2024 by brianraymor
@brianraymor
Evolve development_stage_ontology_term_id to support multiple species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1033 opened Oct 10, 2024 by brianraymor
@brianraymor
3
small dev_stage recommended updates schema CELLxGENE Discover dataset schema
#1031 opened Oct 7, 2024 by jahilton
Draft relaxed schema compliance discovery schema CELLxGENE Discover dataset schema
#1025 opened Sep 27, 2024 by brianraymor
@brianraymor
2
ontology updates w/ 5.3.0 5.3 Next minor CELLxGENE schema version after 5.2 curation Updates to published datasets
#1023 opened Sep 26, 2024 by jahilton
2
Require CSR encoding in X (Matrix Layers) 5.3 Next minor CELLxGENE schema version after 5.2 schema CELLxGENE Discover dataset schema
#1022 opened Sep 25, 2024 by brianraymor
@brianraymor
4
Draft Caenorhabditis elegans drafting drafting schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1020 opened Sep 25, 2024 by brianraymor
@brianraymor
Draft Xenopus laevis (African clawed frog) and Xenopus tropicalis (tropical clawed frog) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1019 opened Sep 25, 2024 by brianraymor
@brianraymor
2
Draft Callithrix jacchus (white-tufted-ear marmoset) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1018 opened Sep 25, 2024 by brianraymor
@brianraymor
Draft Rattus norvegicus (Norway rat) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1017 opened Sep 25, 2024 by brianraymor
@brianraymor
Draft Macaca fascicularis (crab-eating macaque) and Macaca mulatta (Rhesus macaque) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1015 opened Sep 25, 2024 by brianraymor
@brianraymor
Draft Ambystoma mexicanum (axolotl) in review reviewing schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1014 opened Sep 25, 2024 by brianraymor
@brianraymor
Add requirements for 10X multiome discovery schema CELLxGENE Discover dataset schema
#1013 opened Sep 24, 2024 by brianraymor
@brianraymor @jahilton
17
Add UBERON bridge between species-specific and taxon-neutral ontology terms multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1003 opened Sep 3, 2024 by brianraymor
@brianraymor
Add CL bridge between species-specific and taxon-neutral ontology terms multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1002 opened Sep 3, 2024 by brianraymor
@brianraymor
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