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chore: update docs location and link for seurat notice #6310

chore: update docs location and link for seurat notice

chore: update docs location and link for seurat notice #6310

Triggered via pull request October 25, 2024 13:44
Status Success
Total duration 20m 11s
Artifacts 5

rdev-update-for-pr.yml

on: pull_request
get_previous_image_digests
1m 6s
get_previous_image_digests
Matrix: build_images / build_images
seed-wmg-cellguide-rdev
2m 9s
seed-wmg-cellguide-rdev
summarize
0s
summarize
rdev-tests  /  seed-database-e2e-tests
17s
rdev-tests / seed-database-e2e-tests
rdev-tests  /  functional-test
9m 13s
rdev-tests / functional-test
delete-previous-images
18s
delete-previous-images
Matrix: rdev-tests / run-e2e-tests
rdev-tests  /  e2e-logged-in-test
7m 58s
rdev-tests / e2e-logged-in-test
rdev-tests  /  merge-playwright-reports
1m 1s
rdev-tests / merge-playwright-reports
rdev-tests  /  e2e-test
3s
rdev-tests / e2e-test
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5 errors, 34 warnings, and 6 notices
[chromium] › tests/features/collection/revision.test.ts:100:7 › Collection Revision @loggedIn › starts a revision: frontend/tests/features/collection/revision.test.ts#L1
1) [chromium] › tests/features/collection/revision.test.ts:100:7 › Collection Revision @loggedin › starts a revision Test timeout of 300000ms exceeded.
[chromium] › tests/features/collection/revision.test.ts:100:7 › Collection Revision @loggedIn › starts a revision: frontend/tests/features/collection/revision.test.ts#L635
1) [chromium] › tests/features/collection/revision.test.ts:100:7 › Collection Revision @loggedin › starts a revision Error: locator.getAttribute: Test timeout of 300000ms exceeded. Call log: - waiting for getByTestId('revision-status').locator('a') 633 | .getByTestId(COLLECTION_STATUS_BANNER_ID) 634 | .locator("a") > 635 | .getAttribute("href"); | ^ 636 | 637 | /** 638 | * (thuang): Sometimes the dropdown is already open, so we need to check if it's at deleteRevision (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/collection/revision.test.ts:635:6) at /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/collection/revision.test.ts:137:11
[chromium] › tests/features/collection/revision.test.ts:329:9 › Collection Revision @loggedIn › reorder datasets › saves reorder: frontend/tests/features/collection/revision.test.ts#L565
2) [chromium] › tests/features/collection/revision.test.ts:329:9 › Collection Revision @loggedin › reorder datasets › saves reorder Error: tryUntil() failed - Maxed out timeout of 60000ms: No available collection 563 | } 564 | > 565 | throw new Error("No available collection"); | ^ 566 | } 567 | }, 568 | { page, timeoutMs: WAIT_FOR_MIN_USABLE_COLLECTION_TIMEOUT_MS } at page.page (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/collection/revision.test.ts:565:15) at tryUntil (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/utils/helpers.ts:165:7) at startRevision (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/collection/revision.test.ts:537:3) at startReorderableRevision (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/collection/revision.test.ts:772:3) at /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/collection/revision.test.ts:331:7
[chromium] › tests/features/cellGuide/cellGuide.test.ts:701:11 › Cell Guide › CellGuide Card › Ontology Viewer › Clicking on a parent node expands and collapses its children: frontend/tests/features/cellGuide/cellGuide.test.ts#L1
1) [chromium] › tests/features/cellGuide/cellGuide.test.ts:701:11 › Cell Guide › CellGuide Card › Ontology Viewer › Clicking on a parent node expands and collapses its children Test timeout of 300000ms exceeded.
[chromium] › tests/features/cellGuide/cellGuide.test.ts:701:11 › Cell Guide › CellGuide Card › Ontology Viewer › Clicking on a parent node expands and collapses its children: frontend/tests/utils/helpers.ts#L178
1) [chromium] › tests/features/cellGuide/cellGuide.test.ts:701:11 › Cell Guide › CellGuide Card › Ontology Viewer › Clicking on a parent node expands and collapses its children Error: page.waitForTimeout: Target page, context or browser has been closed at tests/utils/helpers.ts:178 176 | } 177 | > 178 | await page.waitForTimeout(WAIT_FOR_MS); | ^ 179 | } 180 | } 181 | at tryUntil (/home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/utils/helpers.ts:178:18) at /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/tests/features/cellGuide/cellGuide.test.ts:730:9
build_images / build_images (upload_success)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images / build_images (upload_success)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
build_images / build_images (dataset_submissions)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images / build_images (dataset_submissions)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
build_images / build_images (upload_failures)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images / build_images (upload_failures)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
build_images / build_images (wmg_processing)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images / build_images (wmg_processing)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
build_images / build_images (cellguide_pipeline)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images / build_images (cellguide_pipeline)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
build_images / build_images (processing)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images / build_images (processing)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
seed-wmg-cellguide-rdev
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
seed-wmg-cellguide-rdev
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
build_images / build_images (frontend)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
build_images / build_images (frontend)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
deploy-rdev
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
deploy-rdev
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
rdev-tests / seed-database-e2e-tests
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
rdev-tests / seed-database-e2e-tests
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
rdev-tests / e2e-tests chromium 3 of 5
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
rdev-tests / e2e-tests chromium 3 of 5
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
rdev-tests / e2e-tests chromium 2 of 5
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
rdev-tests / e2e-tests chromium 2 of 5
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
rdev-tests / e2e-tests chromium 4 of 5
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
rdev-tests / e2e-tests chromium 4 of 5
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
rdev-tests / e2e-tests chromium 5 of 5
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
rdev-tests / e2e-tests chromium 5 of 5
No files were found with the provided path: /home/runner/work/single-cell-data-portal/single-cell-data-portal/frontend/playwright-report. No artifacts will be uploaded.
rdev-tests / e2e-logged-in-test
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
rdev-tests / e2e-tests chromium 1 of 5
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
rdev-tests / functional-test
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
rdev-tests / functional-test
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
rdev-tests / merge-playwright-reports
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/download-artifact@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "all-blob-reports", "allure-results", "html-report--attempt-1", "playwright-report chromium 1 of 5". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
🎭 Playwright Run Summary
1 skipped 59 passed (5.0s)
🎭 Playwright Run Summary
1 skipped 59 passed (1.3m)
🎭 Playwright Run Summary
3 skipped 56 passed (3.1m)
🎭 Playwright Run Summary
4 skipped 55 passed (5.5m)
🎭 Playwright Run Summary
2 flaky [chromium] › tests/features/collection/revision.test.ts:100:7 › Collection Revision @loggedin › starts a revision [chromium] › tests/features/collection/revision.test.ts:329:9 › Collection Revision @loggedin › reorder datasets › saves reorder 15 passed (6.6m)
🎭 Playwright Run Summary
1 flaky [chromium] › tests/features/cellGuide/cellGuide.test.ts:701:11 › Cell Guide › CellGuide Card › Ontology Viewer › Clicking on a parent node expands and collapses its children 3 skipped 56 passed (7.1m)

Artifacts

Produced during runtime
Name Size
all-blob-reports Expired
12.7 MB
allure-results
15.1 MB
html-report--attempt-1
15.1 MB
logged-in-test-results
3.79 MB
playwright-report chromium 1 of 5
13.3 MB