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ENH: Sort __globals__ dict to make pickle string more deterministic #418

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effigies
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I have been told that deterministic pickle strings are not an explicit goal of this package, but this is a small patch that allows us to exclude a source of non-determinism that is related to the Python random number generator, rather than the complexity of the pickled object.

Specifically, this patch sorts the __globals__ dict, the ordering of which can be sensitive to the global RNG. This required some changes to allow us to access the results of pickling under different states.

For more information on the use case, see nipype/pydra#457.

Separate out the retrieval of the pickle string from the subprocess with
the unpickling, so the string can be directly compared.

This patch also adds an add_env parameter to allow subprocesses to be
passed environment variables. The main use case under consideration is
setting PYTHONHASHSEED, allowing these functions to be used to confirm
(in)consistency of strings under different initial conditions.
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codecov bot commented Apr 21, 2021

Codecov Report

Merging #418 (1491be9) into master (6e0f571) will decrease coverage by 0.01%.
The diff coverage is 100.00%.

❗ Current head 1491be9 differs from pull request most recent head b92c296. Consider uploading reports for the commit b92c296 to get more accurate results
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@@            Coverage Diff             @@
##           master     #418      +/-   ##
==========================================
- Coverage   91.76%   91.75%   -0.02%     
==========================================
  Files           4        4              
  Lines         668      667       -1     
  Branches      136      136              
==========================================
- Hits          613      612       -1     
  Misses         34       34              
  Partials       21       21              
Impacted Files Coverage Δ
cloudpickle/cloudpickle_fast.py 96.75% <100.00%> (ø)
cloudpickle/cloudpickle.py 86.91% <0.00%> (-0.04%) ⬇️

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@@ -2321,6 +2323,22 @@ def __type__(self):
o = MyClass()
pickle_depickle(o, protocol=self.protocol)

@pytest.mark.skipif(
sys.version_info < (3, 6, 0),
reason="Dict determinism is a lost cause in Python < 3.6")
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With 3.5 EOL, it does not seem worth putting any effort into this. Downstream tools that care about determinism have likely been 3.6+ anyway.

@effigies
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Note that failure appears to be related to pytest-dev/pytest#8539 / https://bugs.python.org/issue43798. Should be fixed at next pytest release.

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satra commented Apr 29, 2021

@ogrisel - any thoughts on this PR?

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I think __globals__ should never be so large than sorting yield a significant performance overhead but I would still be interested in a quick non-regression benchmark with a case where there are 1000+ global variables.

Other than that, LGTM.

@effigies
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@ogrisel I put in a test. Let me know if that's what you had in mind.

_TEST_BIG_GLOBAL_SPACE.__code__) == gvars
tic = time.time()
subprocess_pickle_string(_TEST_BIG_GLOBAL_SPACE, protocol=self.protocol)
assert time.time() - tic < 0.5
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I would rather not put tests that depend on the runtime because the CI workers can overloaded from time to time and those tests would fail at random.

Instead just run a one-off benchmark and post the results in the comments of this PR.

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No need to address this if we chose to go for #428 (which I think we should ;).

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ogrisel commented Jun 30, 2021

Discussing with @pierreglaser we found an alternative way to achieve the same results without sorting explicitly: #428.

@effigies
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I feel like I used the dict with None values for something recently, so not sure why I didn't think of it here. Much cleaner than a sort.

I'm good with closing this in favor of #428, but I'll leave when to you.

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ogrisel commented Jun 30, 2021

Closing in favor of #428.

@ogrisel ogrisel closed this Jun 30, 2021
@effigies effigies deleted the enh/sort_globals branch March 29, 2022 12:09
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3 participants