Source code for Delphi's papers on our COVIDcast effort, published in the Proceedings of the National Academy of Sciences special issue "Beyond Cases and Deaths: The Benefits of Auxiliary Data Streams in Tracking the COVID-19 Pandemic" (vol. 118 no. 51, December 2021). Each directory contains the text, figures, and code used to produce each paper:
- forecast: Text and code for "Can Auxiliary Indicators Improve COVID-19 Forecasting and Hotspot Prediction?", by Daniel J. McDonald, Jacob Bien, Alden Green, Addison J. Hu, Nat DeFries, Sangwon Hyun, Natalia L. Oliveira, James Sharpnack, Jingjing Tang, Robert Tibshirani, Valérie Ventura, Larry Wasserman, and Ryan J. Tibshirani.
- indicators: Text and code for "An Open Repository of Real-Time COVID-19 Indicators", by Alex Reinhart, Logan Brooks, Maria Jahja, Aaron Rumack, Jingjing Tang, Sumit Agrawal, Wael Al Saeed, Taylor Arnold, Amartya Basu, Jacob Bien, Ángel A. Cabrera, Andrew Chin, Eu Jing Chua, Brian Clark, Sarah Colquhoun, Nat DeFries, David C. Farrow, Jodi Forlizzi, Jed Grabman, Samuel Gratzl, Alden Green, George Haff, Robin Han, Kate Harwood, Addison J. Hu, Raphael Hyde, Sangwon Hyun, Ananya Joshi, Jimi Kim, Andrew Kuznetsov, Wichada La Motte-Kerr, Yeon Jin Lee, Kenneth Lee, Zachary C. Lipton, Michael X. Liu, Lester Mackey, Kathryn Mazaitis, Daniel J. McDonald, Phillip McGuinness, Balasubramanian Narasimhan, Michael P. O'Brien, Natalia L. Oliveira, Pratik Patil, Adam Perer, Collin A. Politsch, Samyak Rajanala, Dawn Rucker, Chris Scott, Nigam H. Shah, Vishnu Shankar, James Sharpnack, Dmitry Shemetov, Noah Simon, Benjamin Y. Smith, Vishakha Srivastava, Shuyi Tan, Robert Tibshirani, Elena Tuzhilina, Ana Karina Van Nortwick, Valérie Ventura, Larry Wasserman, Benjamin Weaver, Jeremy C. Weiss, Spencer Whitman, Kristin Williams, Roni Rosenfeld, and Ryan J. Tibshirani.
- survey: Text and code for "The US COVID-19 Trends and Impact Survey: Continuous real-time measurement of COVID-19 symptoms, risks, protective behaviors, testing, and vaccination", by Joshua A. Salomon, Alex Reinhart, Alyssa Bilinski, Eu Jing Chua, Wichada La Motte-Kerr, Minttu M. Rönn, Marissa Reitsma, Katherine Ann Morris, Sarah LaRocca, Tamar Farag, Frauke Kreuter, Roni Rosenfeld, and Ryan J. Tibshirani.
- perspective: Text for "Epidemic Tracking and Forecasting: Lessons Learned from a Tumultuous Year", by Roni Rosenfeld and Ryan J. Tibshirani.
The common directory contains BibTeX and LaTeX utilities. The cover
directory contains code used to produce the cover graphic.
R source code is provided under the MIT license; see the LICENSE file for full
text.
The text of each paper, in the form of LaTeX source files and associated PDFs, is published under the terms of the Creative Commons Attribution License 4.0.