hedgehog v1.12

Release notes

• Update to RF model for pango designation version 1.29
• 1078 lineage sets trained
• Data for training recent as of 2024-08-23

hedgehog v1.11

New hedgehog release tag for Pango version 1.28.

hedgehog v1.10

Release notes

• Update to hedgehog model with Pango designation version 1.27.
• 1034 lineage sets with data from GISAID recent as of 2024-05-22.

hedgehog v1.8

Release notes

• Update to hedgehog set training for Pango designation tag 1.25
• 995 lineage sets describing latest data from GISAID recent as of 2024-02-23
• python version fixed to 3.10

hedgehog v1.9.1

Pinned python version in env to 3.10 to avoid interaction of snakemake and python 3.12 as described in snakemake/snakemake#2648

hedgehog v1.9

Release notes

• Update to hedgehog model with Pango designation version 1.26.
• 1018 lineage sets with data from GISAID recent as of 2024-04-12.

hedgehog v1.7.1

Release notes

• Patch to Pango designation tag 1.24 with updated data
• 963 lineage sets describing latest data from GISAID recent as of 2024-01-22

hedgehog v1.7

Release notes

• Updated model of Pango tag 1.24.
• 978 lineage sets describing latest data from GISAID recent as of 2023-12-21 (will update again with more recent GISAID data).

hedgehog v1.6.1

Release notes

• Updated model of Pango tag 1.23, but updated from main on 2021-11-21.
• 919 lineage sets describing latest data from GISAID recent as of 2023-11-21.

hedgehog v1.6

Release notes

• Update to lineage set rf model for pango-designation version 1.23
• Note, only lineages with >5 unique sequences have been added to the training for spike
• Updated precision calculation code that increases the precision call for complex recombinant lineage sets