Skip to content

Commit

Permalink
Added new lineage BA.2.12.1 with 265 new sequence designations
Browse files Browse the repository at this point in the history
  • Loading branch information
chrisruis committed Apr 6, 2022
1 parent d5d76e7 commit 137c13b
Show file tree
Hide file tree
Showing 2 changed files with 266 additions and 0 deletions.
1 change: 1 addition & 0 deletions lineage_notes.txt
Original file line number Diff line number Diff line change
Expand Up @@ -650,6 +650,7 @@ BA.2.10 Alias of B.1.1.529.2.10, lineage from pango-designation issue #496
BA.2.10.1 Alias of B.1.1.529.2.10.1, lineage in Singapore and other countries
BA.2.11 Alias of B.1.1.529.2.11, France lineage, from pango-designation issue #491
BA.2.12 Alias of B.1.1.529.2.12, North America and Europe lineage
BA.2.12.1 Alias of B.1.1.529.2.12.1, USA lineage
BA.3 Alias of B.1.1.529.3, from pango-designation issue #367
BA.4 Alias of B.1.1.529.4, from pango-designation issue #517
BA.5 Alias of B.1.1.529.5, from pango-designation issue #517
Expand Down
265 changes: 265 additions & 0 deletions lineages.csv
Original file line number Diff line number Diff line change
Expand Up @@ -1350740,3 +1350740,268 @@ Wales/LSPA-3C2EC4F/2022,BA.2.12
Wales/LSPA-3C06DA4/2022,BA.2.12
USA/NJ-CDC-LC0566487/2022,BA.2.12
USA/NJ-CDC-LC0566130/2022,BA.2.12
Canada/BC-BCCDC-353495/2022,BA.2.12.1
USA/NY-CDC-LC0553978/2022,BA.2.12.1
USA/NY-CDC-ASC210730967/2022,BA.2.12.1
USA/IN-CDC-LC0557478/2022,BA.2.12.1
USA/NY-CDC-LC0558506/2022,BA.2.12.1
USA/NH-CDC-LC0558459/2022,BA.2.12.1
USA/NY-CDC-LC0558493/2022,BA.2.12.1
USA/NH-CDC-LC0559232/2022,BA.2.12.1
USA/NY-CDC-LC0559882/2022,BA.2.12.1
USA/NY-CDC-LC0559971/2022,BA.2.12.1
USA/NY-CDC-LC0559969/2022,BA.2.12.1
USA/NY-CDC-ASC210757239/2022,BA.2.12.1
USA/FL-CDC-ASC210732875/2022,BA.2.12.1
USA/NY-CDC-ASC210757044/2022,BA.2.12.1
USA/NY-CDC-ASC210732824/2022,BA.2.12.1
USA/NY-CDC-ASC210757238/2022,BA.2.12.1
USA/NY-CDC-ASC210732360/2022,BA.2.12.1
USA/VA-CDC-ASC210732387/2022,BA.2.12.1
USA/MA-CDC-STM-DK6S3GMWQ/2022,BA.2.12.1
USA/NY-CDC-ASC210757751/2022,BA.2.12.1
USA/NY-CDC-ASC210757616/2022,BA.2.12.1
USA/NY-CDC-ASC210757958/2022,BA.2.12.1
USA/NY-CDC-ASC210732991/2022,BA.2.12.1
USA/NY-CDC-ASC210732609/2022,BA.2.12.1
USA/NY-SUNYQB-55210125009461/2022,BA.2.12.1
USA/NY-SUNYQB-61201151209481/2022,BA.2.12.1
USA/NY-SUNYQB-61210353713457/2022,BA.2.12.1
USA/NY-SUNYQB-61210501908426/2022,BA.2.12.1
USA/NY-PRL-2022_0309_00D16/2022,BA.2.12.1
USA/NY-PRL-2022_0312_00A10/2022,BA.2.12.1
USA/NY-CDC-QDX34633774/2022,BA.2.12.1
USA/NY-Wadsworth-22012155-01/2022,BA.2.12.1
USA/CT-Broad-CRSP_DRU3DQ6L5D7OVKWB/2022,BA.2.12.1
USA/NY-CDC-STM-MP3NPTB3U/2022,BA.2.12.1
USA/NC-CDC-LC0561303/2022,BA.2.12.1
USA/NY-CDC-LC0561106/2022,BA.2.12.1
USA/NY-CDC-LC0562804/2022,BA.2.12.1
USA/PA-CDC-LC0561169/2022,BA.2.12.1
USA/NY-CDC-LC0561027/2022,BA.2.12.1
USA/PA-CDC-LC0562366/2022,BA.2.12.1
USA/NY-CDC-LC0562367/2022,BA.2.12.1
USA/NY-CDC-LC0562665/2022,BA.2.12.1
USA/NJ-CDC-LC0562666/2022,BA.2.12.1
USA/NY-CDC-ASC210758151/2022,BA.2.12.1
USA/NY-CDC-ASC210758364/2022,BA.2.12.1
USA/NY-CDC-ASC210758376/2022,BA.2.12.1
USA/NY-CDC-ASC210734090/2022,BA.2.12.1
USA/NY-CDC-ASC210734110/2022,BA.2.12.1
USA/NY-CDC-QDX34746935/2022,BA.2.12.1
USA/MA-CDC-STM-G2UM678DJ/2022,BA.2.12.1
USA/FL-CDC-STM-UXRNPYAZZ/2022,BA.2.12.1
USA/MA-CDC-STM-8ZKSQC9YR/2022,BA.2.12.1
USA/MA-Broad-CRSP_4WFVJQOTU6G2OI2O/2022,BA.2.12.1
USA/MA-Broad-CRSP_DFLCTBFSZIDQOONX/2022,BA.2.12.1
USA/MA-Broad-CRSP_OHR4UYN2KXXC5QY3/2022,BA.2.12.1
USA/MA-Broad-CRSP_OUAH3QOXKPWDZAKQ/2022,BA.2.12.1
USA/MA-Broad-CRSP_PQX2NUZX7S72W5JJ/2022,BA.2.12.1
USA/MA-Broad-CRSP_U2PMX7CGM4IQJJZ4/2022,BA.2.12.1
USA/MA-Broad-CRSP_YJUAIWPOPLZRRLXN/2022,BA.2.12.1
USA/VT-Broad-CRSP_CQZJFQCI6ASCLXML/2022,BA.2.12.1
USA/VT-Broad-CRSP_HMWSHXBETNKEFNBZ/2022,BA.2.12.1
USA/VT-Broad-CRSP_WLM5IT4BKA7LDSDA/2022,BA.2.12.1
USA/VT-Broad-CRSP_TUGU74LIYKE4DUVR/2022,BA.2.12.1
USA/UT-UPHL-220321799720/2022,BA.2.12.1
USA/CO-CDC-MMB14727155/2022,BA.2.12.1
USA/NY-URMC-22034754-1/2022,BA.2.12.1
USA/NY-URMC-22034798-1/2022,BA.2.12.1
USA/NY-URMC-22034806-1/2022,BA.2.12.1
USA/NY-URMC-22034827-1/2022,BA.2.12.1
USA/NY-URMC-22034843-1/2022,BA.2.12.1
USA/WA-CDC-UW22031730708/2022,BA.2.12.1
USA/NY-PRL-2022_0316_00A16/2022,BA.2.12.1
USA/NY-PRL-2022_0316_00A17/2022,BA.2.12.1
USA/NY-PRL-2022_0316_00C24/2022,BA.2.12.1
USA/NY-PRL-2022_0316_00D14/2022,BA.2.12.1
USA/NY-PRL-2022_0316_00E11/2022,BA.2.12.1
USA/NY-PRL-2022_0316_00F20/2022,BA.2.12.1
USA/NY-PRL-2022_0320_00D13/2022,BA.2.12.1
USA/NY-PRL-2022_0320_00D17/2022,BA.2.12.1
USA/NY-PRL-2022_0320_01C01/2022,BA.2.12.1
USA/NY-PRL-2022_0320_01F01/2022,BA.2.12.1
USA/NY-PRL-2022_0320_01H09/2022,BA.2.12.1
USA/NY-CDC-ASC210756707/2022,BA.2.12.1
USA/NY-CDC-ASC210844849/2022,BA.2.12.1
USA/FL-CDC-ASC210734727/2022,BA.2.12.1
USA/NY-CDC-ASC210734619/2022,BA.2.12.1
USA/NY-CDC-ASC210845022/2022,BA.2.12.1
USA/NY-CDC-ASC210734771/2022,BA.2.12.1
USA/IL-CDC-ASC210734452/2022,BA.2.12.1
USA/NY-CDC-ASC210731831/2022,BA.2.12.1
USA/NY-CDC-ASC210755905/2022,BA.2.12.1
USA/NY-CDC-ASC210735460/2022,BA.2.12.1
USA/NY-CDC-ASC210735459/2022,BA.2.12.1
USA/NJ-CDC-ASC210735073/2022,BA.2.12.1
USA/NY-CDC-ASC210734933/2022,BA.2.12.1
USA/IL-CDC-ASC210734966/2022,BA.2.12.1
USA/IL-CDC-ASC210735456/2022,BA.2.12.1
USA/NJ-CDC-ASC210735205/2022,BA.2.12.1
USA/NY-CDC-ASC210734352/2022,BA.2.12.1
USA/NY-CDC-ASC210734353/2022,BA.2.12.1
USA/PA-CDC-ASC210734347/2022,BA.2.12.1
USA/NY-CDC-ASC210735958/2022,BA.2.12.1
USA/CT-CDC-ASC210735909/2022,BA.2.12.1
USA/NY-CDC-ASC210735869/2022,BA.2.12.1
USA/NY-CDC-ASC210845959/2022,BA.2.12.1
USA/MA-CDC-QDX34789913/2022,BA.2.12.1
USA/NY-CDC-QDX34746936/2022,BA.2.12.1
USA/NY-CDC-QDX34746820/2022,BA.2.12.1
USA/NY-CDC-QDX34746817/2022,BA.2.12.1
USA/NY-CDC-QDX34746826/2022,BA.2.12.1
USA/NY-CDC-QDX34836430/2022,BA.2.12.1
USA/NY-CDC-QDX34836465/2022,BA.2.12.1
USA/NY-CDC-QDX34789714/2022,BA.2.12.1
USA/NC-CDC-QDX34836316/2022,BA.2.12.1
USA/CT-Yale-18002/2022,BA.2.12.1
USA/MA-Broad-CRSP_NYSO4WJD2GTSU5YI/2022,BA.2.12.1
USA/MA-Broad-CRSP_UUF2VWWUSJ2BK7EQ/2022,BA.2.12.1
USA/VT-Broad-CRSP_3ZF5J5HRMJYBDZRX/2022,BA.2.12.1
USA/VT-Broad-CRSP_4IMETAM5WJXILA2N/2022,BA.2.12.1
USA/VT-Broad-CRSP_L46N2PN4L6CXCXOK/2022,BA.2.12.1
USA/VT-Broad-CRSP_RISYJ3DG5HQ4K757/2022,BA.2.12.1
USA/VT-Broad-CRSP_T5OKFYH4JQ7FYZIW/2022,BA.2.12.1
USA/NY-CDC-LC0564346/2022,BA.2.12.1
USA/NJ-CDC-LC0564383/2022,BA.2.12.1
USA/NY-CDC-LC0564356/2022,BA.2.12.1
USA/NY-CDC-LC0564597/2022,BA.2.12.1
USA/NY-CDC-LC0564665/2022,BA.2.12.1
USA/NY-CDC-LC0564676/2022,BA.2.12.1
USA/NY-CDC-LC0564273/2022,BA.2.12.1
USA/NJ-CDC-LC0564183/2022,BA.2.12.1
USA/NY-CDC-LC0564433/2022,BA.2.12.1
USA/NC-CDC-LC0564025/2022,BA.2.12.1
USA/NY-CDC-LC0564336/2022,BA.2.12.1
USA/NJ-CDC-LC0564208/2022,BA.2.12.1
USA/NY-CDC-LC0564164/2022,BA.2.12.1
USA/NJ-CDC-LC0565086/2022,BA.2.12.1
USA/NJ-CDC-LC0565108/2022,BA.2.12.1
USA/NY-CDC-LC0565113/2022,BA.2.12.1
USA/NY-CDC-LC0565164/2022,BA.2.12.1
USA/NY-CDC-LC0564856/2022,BA.2.12.1
USA/NJ-CDC-LC0564860/2022,BA.2.12.1
USA/NC-CDC-LC0565310/2022,BA.2.12.1
USA/NH-CDC-LC0564725/2022,BA.2.12.1
USA/CA-CDC-LC0565779/2022,BA.2.12.1
USA/OR-CDC-LC0565853/2022,BA.2.12.1
USA/NY-CDC-LC0564804/2022,BA.2.12.1
USA/NY-CDC-LC0564782/2022,BA.2.12.1
USA/NY-CDC-LC0565217/2022,BA.2.12.1
USA/NY-CDC-LC0564781/2022,BA.2.12.1
USA/NY-CDC-LC0564783/2022,BA.2.12.1
USA/NY-CDC-LC0565255/2022,BA.2.12.1
USA/DC-CDC-LC0564853/2022,BA.2.12.1
USA/NY-CDC-LC0565181/2022,BA.2.12.1
USA/NY_MEDDAC_FD_437/2022,BA.2.12.1
Scotland/QEUH-3C09D29/2022,BA.2.12.1
USA/WI-WSLH-2204703/2022,BA.2.12.1
USA/PA-CDC-STM-N8HYUVPCT/2022,BA.2.12.1
USA/NY-CDC-ASC210735656/2022,BA.2.12.1
USA/NY-CDC-ASC210845281/2022,BA.2.12.1
USA/NY-CDC-ASC210735561/2022,BA.2.12.1
USA/NY-CDC-ASC210845400/2022,BA.2.12.1
USA/NY-CDC-ASC210735580/2022,BA.2.12.1
USA/NY-CDC-ASC210845544/2022,BA.2.12.1
USA/NY-CDC-ASC210845520/2022,BA.2.12.1
USA/NY-CDC-ASC210845610/2022,BA.2.12.1
USA/UT-CDC-ASC210736090/2022,BA.2.12.1
USA/CT-CDC-ASC210735820/2022,BA.2.12.1
USA/NY-CDC-ASC210736471/2022,BA.2.12.1
USA/NJ-CDC-ASC210736425/2022,BA.2.12.1
USA/NY-CDC-ASC210736415/2022,BA.2.12.1
USA/NY-CDC-ASC210845672/2022,BA.2.12.1
USA/NY-CDC-ASC210736503/2022,BA.2.12.1
USA/ME-CDC-ASC210845607/2022,BA.2.12.1
USA/NJ-PHEL-V22013996-rep1/2022,BA.2.12.1
USA/NJ-PHEL-V22014078/2022,BA.2.12.1
USA/NJ-PHEL-V22014739/2022,BA.2.12.1
USA/NY-CDC-QDX34993019/2022,BA.2.12.1
USA/AZ-CDC-QDX34975437/2022,BA.2.12.1
USA/PA-CDC-QDX34993014/2022,BA.2.12.1
USA/NJ-CDC-QDX34884427/2022,BA.2.12.1
USA/NY-CDC-QDX34884433/2022,BA.2.12.1
USA/NY-CDC-QDX34992327/2022,BA.2.12.1
USA/NY-CDC-ASC210736304/2022,BA.2.12.1
USA/NY-CDC-ASC210736241/2022,BA.2.12.1
USA/NY-CDC-ASC210846134/2022,BA.2.12.1
USA/NY-CDC-ASC210845958/2022,BA.2.12.1
USA/NY-CDC-ASC210846133/2022,BA.2.12.1
USA/TN-CDC-ASC210846097/2022,BA.2.12.1
USA/TN-CDC-ASC210846098/2022,BA.2.12.1
USA/NY-NYULH6111/2022,BA.2.12.1
USA/NY-NYULH6123/2022,BA.2.12.1
USA/NY-NYULH6170/2022,BA.2.12.1
USA/NY-NYULH6185/2022,BA.2.12.1
USA/NY-NYULH6189/2022,BA.2.12.1
USA/PA-CDC-QDX34992658/2022,BA.2.12.1
USA/NY-CDC-QDX34993016/2022,BA.2.12.1
USA/PA-CDC-QDX34992693/2022,BA.2.12.1
USA/NJ-CDC-QDX34992669/2022,BA.2.12.1
USA/NY-CDC-QDX34993032/2022,BA.2.12.1
USA/NY-CDC-QDX34993033/2022,BA.2.12.1
USA/NY-CDC-QDX34993047/2022,BA.2.12.1
USA/NY-CDC-QDX34993059/2022,BA.2.12.1
USA/NY-CDC-QDX34992243/2022,BA.2.12.1
USA/NJ-CDC-QDX34992809/2022,BA.2.12.1
USA/NY-CDC-QDX34992794/2022,BA.2.12.1
USA/PA-CDC-QDX34992210/2022,BA.2.12.1
USA/NY-CDC-QDX34993110/2022,BA.2.12.1
USA/NY-CDC-QDX34993135/2022,BA.2.12.1
USA/NY-CDC-QDX34993117/2022,BA.2.12.1
USA/NY-CDC-QDX34993159/2022,BA.2.12.1
USA/NY-CDC-ASC210846135/2022,BA.2.12.1
USA/NY-CDC-ASC210737165/2022,BA.2.12.1
USA/NY-CDC-ASC210737164/2022,BA.2.12.1
USA/NJ-CDC-ASC210845837/2022,BA.2.12.1
USA/NY-CDC-ASC210737172/2022,BA.2.12.1
USA/NY-NYCPHL-010764/2022,BA.2.12.1
USA/NY-NYCPHL-010874/2022,BA.2.12.1
USA/NY-NYCPHL-010877/2022,BA.2.12.1
USA/NY-NYCPHL-010882/2022,BA.2.12.1
USA/PA-Curative-287657/2022,BA.2.12.1
USA/PA-Curative-281178/2022,BA.2.12.1
USA/DC-Curative-244101/2022,BA.2.12.1
USA/CO-CDC-MMB14757241/2022,BA.2.12.1
USA/CO-CDC-MMB14771955/2022,BA.2.12.1
USA/CO-CDC-MMB14778861/2022,BA.2.12.1
USA/CO-CDC-MMB14786630/2022,BA.2.12.1
USA/CO-CDC-MMB14787753/2022,BA.2.12.1
USA/CO-CDC-MMB14787754/2022,BA.2.12.1
USA/CO-CDC-MMB14797358/2022,BA.2.12.1
USA/CO-CDC-MMB14794296/2022,BA.2.12.1
USA/MD-CDC-MMB14796085/2022,BA.2.12.1
USA/HI-H229120/2022,BA.2.12.1
USA/CA-HLX-STM-BSXP8XNHP/2022,BA.2.12.1
USA/NY-MSHSPSP-PV56475/2022,BA.2.12.1
USA/NY-URMC-22034968-1/2022,BA.2.12.1
USA/NY-URMC-22034980-1/2022,BA.2.12.1
USA/NY-URMC-22035008-1/2022,BA.2.12.1
USA/NY-URMC-22035015-1/2022,BA.2.12.1
USA/NY-URMC-22035018-1/2022,BA.2.12.1
USA/NY-URMC-22035030-1/2022,BA.2.12.1
USA/NY-URMC-22035036-1/2022,BA.2.12.1
USA/NJ-CDC-LC0566542/2022,BA.2.12.1
USA/NJ-CDC-LC0566539/2022,BA.2.12.1
USA/NY-CDC-LC0566345/2022,BA.2.12.1
USA/MA-CDC-LC0566365/2022,BA.2.12.1
USA/MA-CDC-LC0566366/2022,BA.2.12.1
USA/NJ-CDC-LC0566489/2022,BA.2.12.1
USA/NY-CDC-LC0566348/2022,BA.2.12.1
USA/NY-CDC-LC0566347/2022,BA.2.12.1
USA/NY-CDC-LC0566351/2022,BA.2.12.1
USA/NY-CDC-LC0566439/2022,BA.2.12.1
USA/NY-CDC-LC0566604/2022,BA.2.12.1
USA/MA-CDC-LC0566332/2022,BA.2.12.1
USA/NY-CDC-LC0566422/2022,BA.2.12.1
USA/NC-CDC-LC0566175/2022,BA.2.12.1
USA/NJ-CDC-LC0566275/2022,BA.2.12.1
USA/NY-CDC-LC0566247/2022,BA.2.12.1
USA/NY-CDC-LC0566262/2022,BA.2.12.1
USA/NJ-CDC-LC0566270/2022,BA.2.12.1
USA/CT-CDC-LC0566383/2022,BA.2.12.1
USA/NY-CDC-LC0566313/2022,BA.2.12.1
USA/NY-CDC-LC0566230/2022,BA.2.12.1
USA/NY-CDC-LC0566157/2022,BA.2.12.1
USA/WA-CDC-UW22032166331/2022,BA.2.12.1
Australia/VIC39183/2022,BA.2.12.1

0 comments on commit 137c13b

Please sign in to comment.