-
Notifications
You must be signed in to change notification settings - Fork 97
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
New JN.1 + S:T572I sublineage in Australia, Canada and New Zealand (213seqs - Australia and New Zealand) with a sublineage with S:G482S (5 ,Aus NZL) #2564
Comments
94 now big upload from NZL (17) , 3% of samples collected there after March 1 |
109 with a batch from NSW it reaches 10% in April there. @corneliusroemer i suggest to designate it |
134 and 7% in SA in April |
Sorry i have mistakenly closed this one in the past weeks. @corneliusroemer one of the best 572I going around. |
185 still around but its share going down quickly closing it |
big upload from NZl of this with a new sublinegae with S:G482S predicted by Nextclade to be slighty beneficial for binding |
new sample with 482S from Australia |
213 but only two in June, hence closing this. |
JN.1 > C6896T > A19578G > S:T572I (C23277T)
Query: C6896T , A19578G , C23277T, T3565C
Samples: 77 Australia, New Zealand Canada
Growth advantage: https://cov-spectrum.org/explore/World/AllSamples/Past3M/variants?nextcladePangoLineage=JN.1*&nucMutations1=C6896T%2CA19578G%2CC23277T%2CT3565C&analysisMode=CompareToBaseline&
Sublineage with S:G482S :
Query: G23006A ,C28419T,T3565C
Defining : #2564 >> Orf1a:L864F (C2855T), Orf1a:K1791R (A5637G), G21423A > Orf1a:E2268K (G7067A), C29708T > S:G482S (G23006A), N:t49I (C28419T)
Tree: (Upodated on June 10)
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice3_genome_test_5f1f3_798b10.json?label=id:node_7068308
IDs:
EPI_ISL_18850360, EPI_ISL_18850499, EPI_ISL_18850678,
EPI_ISL_18880336, EPI_ISL_18915695, EPI_ISL_18915705,
EPI_ISL_18923412, EPI_ISL_18923442, EPI_ISL_18923448,
EPI_ISL_18923472-18923473, EPI_ISL_18923481, EPI_ISL_18923497,
EPI_ISL_18923501, EPI_ISL_18923528, EPI_ISL_18923563,
EPI_ISL_18923576, EPI_ISL_18923706, EPI_ISL_18923813,
EPI_ISL_18923821, EPI_ISL_18923870, EPI_ISL_18940335,
EPI_ISL_18967378, EPI_ISL_18967404, EPI_ISL_18972780,
EPI_ISL_18972786, EPI_ISL_18972790, EPI_ISL_18986980,
EPI_ISL_18987147, EPI_ISL_18990521, EPI_ISL_19002719,
EPI_ISL_19008079, EPI_ISL_19012041, EPI_ISL_19026559,
EPI_ISL_19026584, EPI_ISL_19026586, EPI_ISL_19026596,
EPI_ISL_19026637, EPI_ISL_19026677, EPI_ISL_19026741,
EPI_ISL_19026760-19026762, EPI_ISL_19027028, EPI_ISL_19027059,
EPI_ISL_19027090, EPI_ISL_19028239, EPI_ISL_19036966,
EPI_ISL_19037092-19037093, EPI_ISL_19038703, EPI_ISL_19038725,
EPI_ISL_19040631, EPI_ISL_19043117, EPI_ISL_19046865,
EPI_ISL_19051326-19051327, EPI_ISL_19051413, EPI_ISL_19051423,
EPI_ISL_19054812, EPI_ISL_19055775, EPI_ISL_19055793,
EPI_ISL_19055814, EPI_ISL_19055816, EPI_ISL_19058900,
EPI_ISL_19058907-19058908, EPI_ISL_19058966, EPI_ISL_19058971,
EPI_ISL_19058976, EPI_ISL_19058979, EPI_ISL_19058981,
EPI_ISL_19058990, EPI_ISL_19059011, EPI_ISL_19059049,
EPI_ISL_19059051, EPI_ISL_19059057
IDs for 482S branch:
EPI_ISL_19186723, EPI_ISL_19186777, EPI_ISL_19187076,
EPI_ISL_19187091
The text was updated successfully, but these errors were encountered: