Problem when cloning the repo

[SK1-biocopy]

Hi,

I encounter the follwoing message when cloning your repo. I think there is an issue with untracked files in the LFS?

Encountered 14 files that should have been pointers, but weren't:
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-humanised_esm-1v-1_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-humanised_mwds_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-patented_esm-1v-1_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-patented_mwds_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-thera_esm-1v-1_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-thera_mwds_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability_esm-1v-1_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability_mwds_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability-patented_esm-1v-1_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability-patented_mwds_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability-thera_esm-1v-1_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability-thera_mwds_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability_esm-1v-1_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability_mwds_proj.npy

[matteopariset]

Hi,

Could you please share the sequence of commands you used when cloning the repo?

Thanks

[SK1-biocopy]

Hi,

sure, I just used this line of code to clone the repo:
git clone https://github.com/csi-greifflab/developability_profiling.git

full output that I get is:

Cloning into 'developability_profiling'...
remote: Enumerating objects: 934, done.
remote: Counting objects: 100% (526/526), done.
remote: Compressing objects: 100% (385/385), done.
remote: Total 934 (delta 170), reused 439 (delta 130), pack-reused 408 (from 1)
Receiving objects: 100% (934/934), 366.84 MiB | 25.83 MiB/s, done.
Resolving deltas: 100% (350/350), done.
Filtering content: 100% (82/82), 14.11 GiB | 57.30 MiB/s, done.
Encountered 14 files that should have been pointers, but weren't:
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-humanised_esm-1v-1_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-humanised_mwds_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-patented_esm-1v-1_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-patented_mwds_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-thera_esm-1v-1_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability-thera_mwds_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability_esm-1v-1_proj.npy
	scripts/native_engineered_integration/Native_non-Native_Comparison_complete/v3_heavy-human-developability_mwds_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability-patented_esm-1v-1_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability-patented_mwds_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability-thera_esm-1v-1_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability-thera_mwds_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability_esm-1v-1_proj.npy
	scripts/native_engineered_integration/native_non-native_comparison_light/v3_light-human-developability_mwds_proj.npy

Before I was able to clone it in the first place I needed to install LFS system from github that allows handling of larger repos files?