Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Auto mcp stereo #225

Merged
merged 2 commits into from
May 23, 2024
Merged

Auto mcp stereo #225

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
f52e024
error logging for stereo reconstruction script
jsitarek May 23, 2024
9cf549f
Merge branch 'Torino_auto_MCP' into auto_MCP_stereo
jsitarek May 23, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
9 changes: 6 additions & 3 deletions magicctapipe/scripts/lst1_magic/semi_automatic_scripts/job_accounting.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -101,7 +101,9 @@ def main():
print(f"for path {work_dir} found in {args.config_file} this is available")
print(f"Versions {versions}")
tag = "" if NSB_matching else "/Observations"
print(f"Supported data types: DL1{tag}/M1, DL1{tag}/M2, DL1{tag}/Merged")
print(
f"Supported data types: DL1{tag}/M1, DL1{tag}/M2, DL1{tag}/Merged, DL1Coincident, DL1CoincidentStereo"
)
exit(1)

all_todo = 0
Expand All @@ -114,14 +116,15 @@ def main():
for dir in dirs:
print(dir)
list_dl0 = ""
for file in ["list_dl0.txt", "list_LST.txt"]:
ins = ["list_dl0.txt", "list_LST.txt", "list_coin.txt"]
for file in ins:
if os.path.exists(f"{dir}/logs/{file}"):
list_dl0 = f"{dir}/logs/{file}"
if list_dl0 != "":
with open(list_dl0, "r") as fp:
this_todo = len(fp.readlines())
else:
print(f"{RED}File {list_dl0} is missing{ENDC}")
print(f"{RED}No {ins} files {ENDC}")
this_todo = 0

list_return = f"{dir}/logs/list_return.log"
Expand Down
93 changes: 43 additions & 50 deletions magicctapipe/scripts/lst1_magic/semi_automatic_scripts/stereo_events.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -28,6 +28,10 @@

from magicctapipe import __version__
from magicctapipe.io import resource_file
from magicctapipe.scripts.lst1_magic.semi_automatic_scripts.clusters import (
rc_lines,
slurm_lines,
)

__all__ = ["configfile_stereo", "bash_stereo", "bash_stereoMC"]

Expand Down Expand Up @@ -58,15 +62,9 @@ def configfile_stereo(ids, target_dir, source_name, NSB_match):
config_file, "rb"
) as fc: # "rb" mode opens the file in binary format for reading
config_dict = yaml.safe_load(fc)
coincidence = config_dict["stereo_reco"]
conf = {"stereo_reco": config_dict["stereo_reco"]}

conf = {}
conf["stereo_reco"] = coincidence

if not NSB_match:
file_name = f"{target_dir}/{source_name}/config_stereo.yaml"
else:
file_name = f"{target_dir}/v{__version__}/{source_name}/config_stereo.yaml"
file_name = f"{target_dir}/v{__version__}/{source_name}/config_stereo.yaml"
with open(file_name, "w") as f:
lines = [
"mc_tel_ids:",
Expand Down Expand Up @@ -103,17 +101,16 @@ def bash_stereo(target_dir, source, env_name, NSB_match):

if NSB_match:
coincidence_DL1_dir = f"{target_dir}/v{__version__}/{source}"

else:
coincidence_DL1_dir = f"{target_dir}/{source}/DL1/Observations"
coincidence_DL1_dir = f"{target_dir}/v{__version__}/{source}/DL1/Observations"

listOfNightsLST = np.sort(glob.glob(f"{coincidence_DL1_dir}/DL1Coincident/*"))

for nightLST in listOfNightsLST:
stereoDir = (
f"{coincidence_DL1_dir}/DL1CoincidentStereo/{nightLST.split('/')[-1]}"
)
os.makedirs(f"{stereoDir}/logs")
os.makedirs(f"{stereoDir}/logs", exist_ok=True)
if not os.listdir(f"{nightLST}"):
continue
if len(os.listdir(nightLST)) < 2:
Expand All @@ -127,24 +124,29 @@ def bash_stereo(target_dir, source, env_name, NSB_match):

if process_size < 0:
continue
lines = [
"#!/bin/sh\n\n",
"#SBATCH -p short\n",
f"#SBATCH -J {process_name}_stereo\n",
f"#SBATCH --array=0-{process_size}\n",
"#SBATCH -n 1\n\n",
f"#SBATCH --output={stereoDir}/logs/slurm-%x.%A_%a.out"
f"#SBATCH --error={stereoDir}/logs/slurm-%x.%A_%a.err"
"ulimit -l unlimited\n",
"ulimit -s unlimited\n",
"ulimit -a\n\n",
f"export INPUTDIR={nightLST}\n",
f"export OUTPUTDIR={stereoDir}\n",
"SAMPLE_LIST=($(<$OUTPUTDIR/logs/list_coin.txt))\n",
"SAMPLE=${SAMPLE_LIST[${SLURM_ARRAY_TASK_ID}]}\n",
"export LOG=$OUTPUTDIR/logs/stereo_${SLURM_ARRAY_JOB_ID}_${SLURM_ARRAY_TASK_ID}.log\n",
f"conda run -n {env_name} lst1_magic_stereo_reco --input-file $SAMPLE --output-dir $OUTPUTDIR --config-file {target_dir}/v{__version__}/{source}/config_stereo.yaml >$LOG 2>&1",
]

slurm = slurm_lines(
queue="short",
job_name=f"{process_name}_stereo",
array=process_size,
out_name=f"{stereoDir}/logs/slurm-%x.%A_%a",
)
rc = rc_lines(
store="$SAMPLE ${SLURM_ARRAY_JOB_ID} ${SLURM_ARRAY_TASK_ID}",
out="$OUTPUTDIR/logs/list",
)
lines = (
slurm
+ [
f"export INPUTDIR={nightLST}\n",
f"export OUTPUTDIR={stereoDir}\n",
"SAMPLE_LIST=($(<$OUTPUTDIR/logs/list_coin.txt))\n",
"SAMPLE=${SAMPLE_LIST[${SLURM_ARRAY_TASK_ID}]}\n",
"export LOG=$OUTPUTDIR/logs/stereo_${SLURM_ARRAY_JOB_ID}_${SLURM_ARRAY_TASK_ID}.log\n",
f"conda run -n {env_name} lst1_magic_stereo_reco --input-file $SAMPLE --output-dir $OUTPUTDIR --config-file {target_dir}/v{__version__}/{source}/config_stereo.yaml >$LOG 2>&1\n",
]
+ rc
)
with open(f"{source}_StereoEvents_{nightLST.split('/')[-1]}.sh", "w") as f:
f.writelines(lines)

Expand All @@ -168,9 +170,8 @@ def bash_stereoMC(target_dir, identification, env_name, source):

process_name = source

os.makedirs(f"{target_dir}/{source}/DL1/MC/{identification}/Merged/StereoMerged")

inputdir = f"{target_dir}/{source}/DL1/MC/{identification}/Merged"
os.makedirs(f"{inputdir}/StereoMerged", exist_ok=True)

os.system(
f"ls {inputdir}/dl1*.h5 > {inputdir}/list_coin.txt"
Expand All @@ -179,18 +180,14 @@ def bash_stereoMC(target_dir, identification, env_name, source):
process_size = len(f.readlines()) - 1

with open(f"StereoEvents_MC_{identification}.sh", "w") as f:
lines = [
"#!/bin/sh\n\n",
"#SBATCH -p xxl\n",
f"#SBATCH -J {process_name}_stereo\n",
f"#SBATCH --array=0-{process_size}%100\n",
"#SBATCH --mem=8g\n",
"#SBATCH -n 1\n\n",
f"#SBATCH --output={inputdir}/StereoMerged/logs/slurm-%x.%A_%a.out"
f"#SBATCH --error={inputdir}/StereoMerged/logs/slurm-%x.%A_%a.err"
"ulimit -l unlimited\n",
"ulimit -s unlimited\n",
"ulimit -a\n\n",
slurm = slurm_lines(
queue="xxl",
job_name=f"{process_name}_stereo",
array=f"{process_size}%100",
mem="8g",
out_name=f"{inputdir}/StereoMerged/logs/slurm-%x.%A_%a",
)
lines = slurm + [
f"export INPUTDIR={inputdir}\n",
f"export OUTPUTDIR={inputdir}/StereoMerged\n",
"SAMPLE_LIST=($(<$INPUTDIR/list_coin.txt))\n",
Expand Down Expand Up @@ -242,12 +239,10 @@ def main():
source_in = config["data_selection"]["source_name_database"]
source = config["data_selection"]["source_name_output"]

source_list = []
if source_in is None:
source_list = joblib.load("list_sources.dat")

else:
source_list.append(source)
source_list = [source]
for source_name in source_list:

print("***** Generating file config_stereo.yaml...")
Expand All @@ -260,10 +255,8 @@ def main():
and not NSB_match
):
print("***** Generating the bashscript for MCs...")
bash_stereoMC(target_dir, "gammadiffuse", env_name, source_name)
bash_stereoMC(target_dir, "gammas", env_name, source_name)
bash_stereoMC(target_dir, "protons", env_name, source_name)
bash_stereoMC(target_dir, "protons_test", env_name, source_name)
for part in ["gammadiffuse", "gammas", "protons", "protons_test"]:
bash_stereoMC(target_dir, part, env_name, source_name)

list_of_stereo_scripts = np.sort(glob.glob("StereoEvents_MC_*.sh"))

Expand Down
Loading