dockerize #13
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| name: dockerize | |
| run-name: dockerize | |
| on: | |
| push: | |
| # only build+push docker on release-please tags | |
| # TODO | |
| #tags: ["v*"] | |
| branches: ["test-ci"] | |
| paths: | |
| - ".github/actions/**" | |
| - ".github/workflows/**" | |
| - "conda-recipe/**" | |
| - "genome_kit/**" | |
| - "setup.py" | |
| - "setup/**" | |
| - "src/**" | |
| - "tests/**" | |
| jobs: | |
| docker-build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/build-gk | |
| with: | |
| platform: linux-64 | |
| - name: restore mamba env | |
| id: restore_mamba_cache | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: mamba-env-${{ runner.os }}-${{ runner.arch }}-${{ hashFiles('.github/workflows/run-tests.yaml', '.github/actions/**') }} | |
| path: | | |
| ~/micromamba | |
| ~/.condarc | |
| ~/bin/micromamba | |
| fail-on-cache-miss: true | |
| - name: restore the gk package tarballs | |
| id: restore_gk_pkg | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: mamba-env-${{ runner.os }}-${{ runner.arch }}-${{ hashFiles('.github/workflows/run-tests.yaml', '.github/actions/**', 'conda-recipe/meta.yaml', 'src/**', 'genome_kit/**', 'tests/**') }} | |
| path: | | |
| ~/conda-bld | |
| fail-on-cache-miss: true | |
| - name: create gk env | |
| id: create-gk-env | |
| shell: bash -l -e {0} | |
| run: | | |
| set -x | |
| # explicitly select py310 | |
| pgk_file_path=$(eval ls -1 ~/conda-bld/linux-64/*py310*.tar.bz2 | head -1) | |
| pkg_file=$(basename ${pgk_file_path}) | |
| pkg_version=$(echo $pkg_file | grep -Eo '[0-9]+\.[0-9]+\.[0-9]+') | |
| echo "PKG_VERSION=${pkg_version}" >> $GITHUB_OUTPUT | |
| micromamba activate build | |
| conda index ~/conda-bld | |
| mamba create -n genomekit -c file://${HOME}/conda-bld genomekit=${pkg_version} | |
| set +x | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: ~/micromamba/envs/build/envs/genomekit | |
| file: Dockerfile | |
| # TODO | |
| #push: true | |
| push: false | |
| tags: | | |
| deepgenomicsinc/genomekit:latest | |
| deepgenomicsinc/genomekit:latest-py310 | |
| deepgenomicsinc/genomekit:${{ steps.create-gk-env.outputs.PKG_VERSION }}-py310 |