update sphinx comparison

[denis-yuen]

Description
Update sphinx and transitive dependencies

Issue
See https://ucsc-cgl.atlassian.net/browse/SEAB-6642

Please make sure that you've checked the following before submitting your pull request. Thanks!

• Ensure that the PR targets the correct branch. Check the milestone or fix version of the ticket.
• If the PR has any new pages, only AFTER the PR is approved by all reviewers, generate a new discourse topic, by running the action at https://github.com/dockstore/dockstore-documentation/actions/workflows/add-discourse-topic.yml. Otherwise we may end up with orphaned topics, which would need manual management.

[denis-yuen]

Ah,

Ignored the following versions that require a different python version: 1.0.0 Requires-Python >=3.10; 8.0.0 Requires-Python >=3.10; 8.0.0rc1 Requires-Python >=3.10; 8.0.1 Requires-Python >=3.10; 8.0.2 Requires-Python >=3.10

[denis-yuen]

Oh yeah, I used pip-compile as documented at https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html#pin-your-transitive-dependencies

[aofarrel]

Updating these dependencies in particular can be tricky as it sometimes silently breaks formatting that can get missed at first glance. Will need to check the following before merging:

• pages generated from markdown (.md)
• pages with bullet points <-- this one in particular caused issues previously
• internal and external links
• the clickable images on the homepage
• tables

If you run into any issues with glossarpy, ping me so I can make sure it remains up-to-spec!

[denis-yuen]

Thanks for the pointers, will look for those.
Think we'll keep this open till early in 1.17 so we have some extra time to look