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why cytosine_report output blank file? #128

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realzhang opened this issue Nov 4, 2021 · 0 comments
Open

why cytosine_report output blank file? #128

realzhang opened this issue Nov 4, 2021 · 0 comments

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@realzhang
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Dear dpryan79:
I use the command:
MethylDackel extract -@ 40 --cytosine_report --CHG --CHH --noCpG -o outFile genome.fa alignment.bam
and it output a blank file with size of 0.
If I remove the --noCpG in above, it works with output of all cytosines.
But if I only want the report of non-CpG cytosines?
Thank you very much.

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