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Dear dpryan79:
I use the command: MethylDackel extract -@ 40 --cytosine_report --CHG --CHH --noCpG -o outFile genome.fa alignment.bam
and it output a blank file with size of 0.
If I remove the --noCpG in above, it works with output of all cytosines.
But if I only want the report of non-CpG cytosines?
Thank you very much.
The text was updated successfully, but these errors were encountered:
Dear dpryan79:
I use the command:
MethylDackel extract -@ 40 --cytosine_report --CHG --CHH --noCpG -o outFile genome.fa alignment.bam
and it output a blank file with size of 0.
If I remove the --noCpG in above, it works with output of all cytosines.
But if I only want the report of non-CpG cytosines?
Thank you very much.
The text was updated successfully, but these errors were encountered: