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41 Open 72 Closed
41 Open 72 Closed
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Issues list

Confused by --nOT and --nOB and the examples provided in the issues section
#163 opened Oct 29, 2024 by Flope
2
Does MethylDackel support BSBolt alignment format?
#162 opened Sep 25, 2024 by cemselb
1
[help] Can I use MethylDackel for diploid reference genome please?
#161 opened Sep 17, 2024 by lizhe-gis
1
Can MethylDackel extract per-base methylation metrics for TAPS?
#159 opened Jun 4, 2024 by SEvisual
Alignment trimming for Soft Clip reads?
#158 opened May 12, 2024 by iiiir
Different CpG calls when using different regions of inclusion for Methyldackel extract
#157 opened Apr 3, 2024 by MoniDR
Question about minimum coverage
#154 opened Jan 8, 2024 by desmodus1984
Issue running MethylDackel extract in parallel mode using minConversionEfficiency
#152 opened Dec 1, 2023 by blue-moon22
How to index genome file for MethylDackel?
#150 opened Aug 28, 2023 by harshraj1919
1
Mixed up reads within bam file
#149 opened Aug 11, 2023 by jsikora93
Could not repeat a CpG extraction with the same reference file and its index
#148 opened Jul 8, 2023 by sttongjai
2
Positions in cytosine_report did not match the regions in providing bed file
#146 opened Jun 29, 2023 by huichanghuang
Does indel effect the methylation calling or C context determination
#145 opened Jun 14, 2023 by huichanghuang
1
mbias
#142 opened May 16, 2023 by jsikora93
1
Installation failure: "bigWig.h: No such file or directory"
#139 opened Oct 25, 2022 by phongphak
1
CURL_OPENSSL conflict with samtools
#138 opened Oct 18, 2022 by shraddhapai
3
per-fragment methylation
#136 opened Jul 8, 2022 by BeyondTheProof
2
Genome browsing from MethylDackel bedGraphCpG file
#135 opened May 12, 2022 by emiliomastriani
Stand output
#133 opened Apr 4, 2022 by simonbrd
1
Methylation profile for large genome organisms
#131 opened Mar 8, 2022 by awieeeee
5
perRead output - print Bismark methylation call string?
#129 opened Nov 23, 2021 by embertucci
3
why cytosine_report output blank file?
#128 opened Nov 4, 2021 by realzhang
maxVariantFrac
#123 opened Sep 23, 2021 by Dingersrun
3
cytosine_report differences and question
#116 opened Jun 2, 2021 by nchernia
3
--OT and --OB suggestions by mbias produce "Invalid bounds string"
#112 opened Feb 18, 2021 by DaGaMs
7
ProTip! no:milestone will show everything without a milestone.