Develop (#1365)

* Feature 1091 extent cycloneplotter (#1218)

* Github #1091 add support to define plot's extent

* Github #1091 Add support for defining plot's extent

* Github #1091 add support for defining plot extent

* GitHub #1091 Provide support to define plotting a bounding box of interest and replace deprecated cartopy attributes.

* Github Issue #1091 Add configuration support to define the bounding box defining the area of interest to plot.

* Github Issue #1091 provide support to define bounding box defining the area of interest to plot.

* Github Issue #1091 Removed unused shapely imports

* GItHub Issue #1091 

Removed duplicate CYCLONE_PLOTTER_GLOBAL_PLOT

* Github #1091 Include config settings needed to indicate the region of interest to be plotted.

* Github Issue #1091 Keep only the North Hemisphere lon and lats in the config file to serve as example for plotting a specific area of the map.

* convert file back to unix format via dos2unix and added change that was lost in merge

* return None from function instead of exiting so that METplus clean up functionality will still run

* fixed indentation

* fixed indentation - for loop should not be nested inside other for loop

* fixed check for failure in retrieve_data function

* feature 1223 error if file not found (#1238)

* feature 1252 allow dictionary value for time_summary.width (#1253)

* feature 1213 obs_quality_inc/exc (#1260)

* Feature 1203 ioda2nc (#1262)

* Add default title for the new use case issue template.

* Feature 1019 harmonic preprocessing (#1272)

Co-authored-by: George McCabe <[email protected]>

* Feature 1266 gen ens prod missing ensembles (#1275)

* Feature 1049 statistics list (#1271)

* first attempt at a table #1049

* 2nd attempt, smaller, different formatting table #1049

* trying to get rid of git error message by adding this to the index #1049

* alignment #1049

* trying to text wrap in a table #1049

* attempting to create text wrapping in tables #1049

* removing role, trying to wrap text #1049

* removing html break, trying to wrap text #1049

* adding code to wrap text #1049

* removing code to wrap text #1049

* fixing naming typo #1049

* hitting returns in table #1049

* removing typo file, removing line breaks #1049

* attempting a simple table for text wrapping #1049

* attempting to bold header row in simple table #1049

* simple table line break attempt #1049

* simple table line break attempt #2 #1049

* simple table line break attempt #3 #1049

* trying another | #1049

* 2 trying another | #1049

* 3 trying another | #1049

* trying a blank line #1049

* trying reformating grid #1049

* 2 trying reformating grid #1049

* 3 trying reformating grid #1049

* 4 trying reformating grid #1049

* adding in one more table row #1049

* adding more text #1049

* trying glossary format #1049

* 2 trying glossary format #1049

* 3 trying glossary format #1049

* 4 trying glossary format #1049

* adding glossary format 2D objects #1049

* fixing glossary format 2D objects #1049

* adding glossary items #1049

* fixing glossary format #1049

* hopefully all examples are working #1049

* changing reference to tool

* removing 2D object examples

* removing the unwrapped table

* adding ACC into the example

* fixing formatting #1049

* fixing formatting take 2 #1049

* fixing formatting take 3 #1049

* bolding and language change #1049

* fixing spacing #1049

* fixing spacing again #1049

* changing title #1049

* trying superscript #1049

* superscript glossary #1049

* removing quotes #1049

* fixing spacing #1049

* Tara has decided to go with the glossary format.  Removing table example. #1049

* Adding 2D objects #1049

* 2D objects fix #1049

* 2D objects fix attempt 2 #1049

* 2D objects fix attempt 3 #1049

* 2D objects fix attempt 4 #1049

* 2D objects fix attempt 5 #1049

* 2D objects fix attempt 7 #1049

* 2D objects fix attempt 8 #1049

* ABR added #1049

* adding remaining AB items to list #1049

* adding remaining ACC_ items to list #1049

* ADLAND & AFSS entries #1049

* A entries #1049

* fixing formatting #1049

* fixing formatting #2 #1049

* removing new entries to make it run #1049

* adding a couple back in #1049

* adding a couple more back in #1049

* tool key at the bottom #1049

* spacing changes #1049

* spacing changes another try #1049

* fixing spacing #1049

* fixing spacing attempt 2 #1049

* fixing spacing attempt 3 #1049

* through AREA items #1049

* AMODEL listed twice but it's not #1049

* AMODEL listed twice but it's not #2 #1049

* AMODEL added question marks so it will run #1049

* final A entries #1049

* naming the glossary statistics in hopes of not conflicting with original glossary #1049

* removing glossary statistics space #1049

* Testing multiple glossary names

* Per #1067, working on attempts to have multiple glossaries with the same term

* Per #1067, working on attempts to have multiple glossaries with the same term

* Per #1067, working on attempts to have multiple glossaries with the same term

* Per #1067, removing code with attempts at mutiple glossaries

* Per #1067, adding back three question marks due to duplicate term

* paring down list, adding a table for review

* problems with table

* still trying to get it to publish

* still trying to get a second line in the table

* still trying to get a second line in the table 2

* testing different formatting

* testing different formatting

* trying to comment out the glossary inner workings

* formatting again

* line breaks in table #1049

* adding in some more for an example #1049

* adding new entries in through AREA #1049

* fixing line breaks #1049

* fixing line breaks #1049 #2

* fixing line breaks and warning messages #1049

* fixing line breaks #1049

* adding AREA_RATIO through ASPECT_DIFF

* fixing typo #1049

* fixing typo #1049

* fixing typo #1049 take 2

* adding AXIS_ANG to BCMSE #1049

* adding spacing #1049

* adding spacing removing commas #1049

* removing comma #1049

* BOUNDARY_DIST thru BSS_SMPL #1049

* BOUNDARY_DIST splitting across 2 lines #1049

* cleaning up typos #1049

* calibration thru centriod_dist #1049

* centriod_lat thru centroid_y #1049

* fixing spacing #1049

* removing test glossary #1049

* climo_mean thru crtk_err #1049

* fixing crtk_err spacing #1049

* fixing spacing #1049

* CSI to CURVATURE_Y #1049

* CURVATURE_X & Y spacing #1049

* DEV_CAT to DURATION_DIFF #1049

* EC_VALUE to F #1049

* F_RATE TO FBS #1049

* Fixing spacing #1049

* fcst_clus thru fcst_conv_radius #1049

* removing CTOP_PRS #1049

* fixing the order of tools for FBAR and FBIAS #1049

* fixing spacing #1049

* adding grid-stat to all point-stat entries #1049

* adding fixing spacing #1049

* adding fixing spacing take 2  #1049

* adding fixing spacing take 3  #1049

* adding fixing spacing take 4  #1049

* adding fixing spacing take 5  #1049

* adding fixing spacing take 6  #1049

* adding fixing spacing take 7  #1049

* fixing spacing with a period take 7  #1049

* first attempt fcst_  #1049

* fixing typos #1049

* thru FOBAR #1049

* thru end of F #1049

* g thru h #1049

* i thru intensity #s #1049

* fixing typos #1049

* capturing example for Julie #1049

* thru k #1049

* fixing typos #1049

* thru L #1049

* thru MG #1049

* thru N_ENS #1049

* thru all N #1049

* fixing FBIAS alignment #1049

* fixing ME and MSE alignment #1049

* fixing ME alignment take 2 #1049

* thru OBS_E #1049

* fixing alignment #1049

* fixing alignment n_thresh #1049

* thru OBS_thresh #1049

* thru O #1049

* fixing OOBAR formating #1049

* thru PR_CORR #1049

* commented lines out with line total info #1049

* commented lines out with line total info take 2 #1049

* thru R #1049

* thru SPEED #1049

* thru S #1049

* thru T #1049

* thru U #1049

* thru V #1049

* thru V #1049

* thru Z #1049

* Update statistics_list.rst

Tara is testing editing in UI

* Update statistics_list.rst

Updates through the A's

* Update statistics_list.rst

Cleaning up the A's

* Update statistics_list.rst

Standardizing MODE and MTD entries

* Update statistics_list.rst

Updating B's and C's

* Update statistics_list.rst

Testing adding TC-Stat and TCST to an entry

* Update statistics_list.rst

Clean up of a few A-Cs and then update of Ds

* Update statistics_list.rst

A few clean-ups and Es

* Update statistics_list.rst

Halfway through Fs...

* Update statistics_list.rst

A little clean up and the rest of Fs

* Update statistics_list.rst

G, H, I, Ks

* Update statistics_list.rst

L, M, Ns

* Update statistics_list.rst

A little clean-up and Os

* Update statistics_list.rst

A little clean-up and Os

* Update statistics_list.rst

Rs

* Update statistics_list.rst

S and Ts

* Update statistics_list.rst

The rest of the list

* Update statistics_list.rst

Removed Attr from Stat Type thru E

* Update statistics_list.rst

Remove Attr from Statistics Type through Gs

* Update statistics_list.rst

Remove Attr from Statistic Type through Rs

* Update statistics_list.rst

Remove Attr from Stat Type to the end

* Update statistics_list.rst

Cleaned up some Line Type typos

* Update statistics_list.rst

Still more Attr cleanup

Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: TaraJensen <[email protected]>

* Feature 1263 v4.1.0 beta4 (#1277)

* update version to note development towards beta5

* Feature 934 release stage doc (#1235)

* Per #934 add stages of the METplus release cycle.

* Per #934, adding link to descriptions of the release cycle in the User's Guide.

* Per #934, made corrections

* Per #934, changed Beta and Release Candidate (rc) from bold to subsubsections.

* Update index.rst

Co-authored-by: Julie Prestopnik <[email protected]>

* Feature 344 met util refactor (#1292)

* removed deprecated sections from config examples

* minor change to METplus release guide to add a link to the PDF of the User's Guide instead of downloading it and attaching it to the release

* Feature 1285 extract tiles mtd times (#1315)

* Feature 896 more met config (#1322)

* removed incorrect search keyword

* added workflow_dispatch event so workflow can be triggered by an external repository such as MET to test to ensure that changes from that repo will break anything in METplus

* added another input argument for workflow_dispatch event

* added job with name that shows the event name or the repository name if triggered by an external repository such as MET

* GHA: add username that triggered external event to event info job name

* added required input argument for external trigger that contains the commit hash of the push event that triggered in the other repo

* change event info to show commit hash instead of username that merged the PR

* changed input names to match names of event in repository that triggered workflow

* feature 1320 OMP_NUM_THREADS (#1338)

* Feature 1183 memory documentation (#1340)

Co-authored-by: George McCabe <[email protected]>

* add email address of user who triggered push event to job name

* Feature 1166 series analysis field info (#1353)

* Feature 1116 usecase smos (#1348)

Co-authored-by: Mrinal Biswas <[email protected]>

* turn off new use case from every push

* feature 1236 Control Members in EnsembleStat and GenEnsProd (#1357)

* added optional argument to change the directory to untar new input data into so the same Dockerfile can be used to add data for other METplus components such as MET

* feature 1358 v4.1.0-beta5 release (#1359)

* update version for next development cycle

* Feature 1216 usecase smap (#1361)

* Adding a conf file for SMAP

* Adding a directory to host the read file

* Removing temp file

* Updated the valid dates to match Todd's code

* Adding documentation for SMAP case

* Updates the valis dates to match Todd's code

* Removing a tmp file

* Typo in file name

* Updating the input RTOFS to have the init time instead of the valid time ii the file name

* updated file paths, tesing

* updated use case descriptions, rearranged use case group testing

* put new use case into its own group so that the diff logic can evaluate marine_and_cryosphere:3. The truth data for 3-4 does not exist yet so the diff fails.

Co-authored-by: Mrinal Biswas <[email protected]>
Co-authored-by: George McCabe <[email protected]>

* updated marine_and_cryo grouping

Co-authored-by: George McCabe <[email protected]>
Co-authored-by: johnhg <[email protected]>
Co-authored-by: Christina Kalb <[email protected]>
Co-authored-by: lisagoodrich <[email protected]>
Co-authored-by: Julie Prestopnik <[email protected]>
Co-authored-by: TaraJensen <[email protected]>
Co-authored-by: jprestop <[email protected]>
Co-authored-by: j-opatz <[email protected]>
Co-authored-by: Mrinal Biswas <[email protected]>
Co-authored-by: j-opatz <[email protected]>