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Feature 1392 climo_cdf.direct_prob and SeriesAnalysis #1396

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13bd4ad
Per #1289, rename function to be more clear
georgemccabe Jan 31, 2022
50bb296
Per #1289, add support for explicitly settings file list file path fo…
georgemccabe Jan 31, 2022
c9d6de8
Merge branch 'develop' into feature_1289_file_list
georgemccabe Jan 31, 2022
e0be7e0
Per #1289, add documentation for new config variables used to explici…
georgemccabe Jan 31, 2022
c416b96
Per #1289, added missing glossary entries
georgemccabe Jan 31, 2022
903c544
Per #1289, check if file list file paths exist
georgemccabe Jan 31, 2022
1c384c2
Per #1289, add support for setting explicit file list file paths for …
georgemccabe Jan 31, 2022
232cf74
Per #1289, add debug logging of explicit file list file path to use
georgemccabe Jan 31, 2022
f9fdecb
Per #1289, added glossary items for new config variables for MTD
georgemccabe Jan 31, 2022
7676c50
Per #1289, added support for explicitly setting file list file path f…
georgemccabe Jan 31, 2022
3f54109
Per #1289, add documentation for new config variables to explicitly s…
georgemccabe Jan 31, 2022
fb98504
Fix incorrect variable names for defining obs_window for PB2NC
georgemccabe Jan 31, 2022
00622e1
change deprecated filename_templates section name to config, ci-run-a…
georgemccabe Jan 31, 2022
8e1c549
Per #1289, add support for explicit file list file path for finding e…
georgemccabe Jan 31, 2022
824a3ba
Per #1289, remove function that is no longer used
georgemccabe Jan 31, 2022
1a62528
Per #1289, read new config variables that support setting explicit fi…
georgemccabe Jan 31, 2022
5ec42cf
Per #1289, add documentation for new config variables that allow expl…
georgemccabe Jan 31, 2022
6a624d2
Per #1289, fixed typo in logic for ensuring either input template or …
georgemccabe Jan 31, 2022
b9e4f8c
fix incorrect PB2NC obs_window variable name
georgemccabe Feb 1, 2022
8b8accb
fixed incorrect name for variables to override obs_window beg and end…
georgemccabe Feb 1, 2022
fc57e54
Per #1392, moved handle_climo_cdf function from CompareGridded to Com…
georgemccabe Feb 1, 2022
332b52f
Per #1392, add support for climo_cdf.direct_prob for EnsembleStat, Gr…
georgemccabe Feb 1, 2022
2d65668
merged develop and resolved conflicts
georgemccabe Feb 7, 2022
89d3967
Merge branch 'develop' into feature_1392_climo_cdf
georgemccabe Feb 8, 2022
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30 changes: 30 additions & 0 deletions docs/Users_Guide/glossary.rst
Original file line number Diff line number Diff line change
Expand Up @@ -5445,6 +5445,11 @@ METplus Configuration Glossary

| *Used by:* EnsembleStat

ENSEMBLE_STAT_CLIMO_CDF_DIRECT_PROB
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@georgemccabe I did NOT add climo_cdf.direct_prob to the default Ensemble-Stat config file. As the logic exists today, it does not actually APPLY to Ensemble-Stat. But for convenience, I used the same "climo_cdf" setup across all the tools. And work on dtcenter/MET#1602 might make it applicable. I haven't through through all the details yet though.

I recommend leaving this as-is and am not recommending changes. Just wanted to clarify.

Specify the value for 'climo_cdf.direct_prob' in the MET configuration file for EnsembleStat.

| *Used by:* EnsembleStat

ENSEMBLE_STAT_DUPLICATE_FLAG
Specify the value for 'duplicate_flag' in the MET configuration file for EnsembleStat.

Expand Down Expand Up @@ -6266,6 +6271,11 @@ METplus Configuration Glossary

| *Used by:* GridStat

GRID_STAT_CLIMO_CDF_DIRECT_PROB
Specify the value for 'climo_cdf.direct_prob' in the MET configuration file for GridStat.

| *Used by:* GridStat

POINT_STAT_CLIMO_CDF_CDF_BINS
See :term:`POINT_STAT_CLIMO_CDF_BINS`

Expand All @@ -6284,6 +6294,11 @@ METplus Configuration Glossary

| *Used by:* PointStat

POINT_STAT_CLIMO_CDF_DIRECT_PROB
Specify the value for 'climo_cdf.direct_prob' in the MET configuration file for PointStat.

| *Used by:* PointStat

GRID_STAT_OUTPUT_FLAG_FHO
Specify the value for 'output_flag.fho' in the MET configuration file for GridStat.

Expand Down Expand Up @@ -9045,3 +9060,18 @@ METplus Configuration Glossary
:term:`GEN_ENS_PROD_INPUT_DIR` are ignored.

| *Used by:* GenEnsProd

SERIES_ANALYSIS_CLIMO_CDF_BINS
Specify the value for 'climo_cdf.cdf_bins' in the MET configuration file for SeriesAnalysis.

| *Used by:* SeriesAnalysis

SERIES_ANALYSIS_CLIMO_CDF_CENTER_BINS
Specify the value for 'climo_cdf.center_bins' in the MET configuration file for SeriesAnalysis.

| *Used by:* SeriesAnalysis

SERIES_ANALYSIS_CLIMO_CDF_DIRECT_PROB
Specify the value for 'climo_cdf.direct_prob' in the MET configuration file for SeriesAnalysis.

| *Used by:* SeriesAnalysis
26 changes: 26 additions & 0 deletions docs/Users_Guide/wrappers.rst
Original file line number Diff line number Diff line change
Expand Up @@ -216,6 +216,7 @@ METplus Configuration
| :term:`ENSEMBLE_STAT_CLIMO_CDF_BINS`
| :term:`ENSEMBLE_STAT_CLIMO_CDF_CENTER_BINS`
| :term:`ENSEMBLE_STAT_CLIMO_CDF_WRITE_BINS`
| :term:`ENSEMBLE_STAT_CLIMO_CDF_DIRECT_PROB`
| :term:`ENSEMBLE_STAT_DUPLICATE_FLAG`
| :term:`ENSEMBLE_STAT_SKIP_CONST`
| :term:`ENSEMBLE_STAT_NMEP_SMOOTH_GAUSSIAN_DX`
Expand Down Expand Up @@ -717,6 +718,8 @@ see :ref:`How METplus controls MET config file settings<metplus-control-met>`.
- climo_cdv.center_bins
* - :term:`ENSEMBLE_STAT_CLIMO_CDF_WRITE_BINS`
- climo_cdv.write_bins
* - :term:`ENSEMBLE_STAT_CLIMO_CDF_DIRECT_PROB`
- climo_cdf.direct_prob

**${METPLUS_MASK_GRID}**

Expand Down Expand Up @@ -2806,6 +2809,7 @@ METplus Configuration
| :term:`GRID_STAT_CLIMO_CDF_BINS`
| :term:`GRID_STAT_CLIMO_CDF_CENTER_BINS`
| :term:`GRID_STAT_CLIMO_CDF_WRITE_BINS`
| :term:`GRID_STAT_CLIMO_CDF_DIRECT_PROB`
| :term:`GRID_STAT_OUTPUT_FLAG_FHO`
| :term:`GRID_STAT_OUTPUT_FLAG_CTC`
| :term:`GRID_STAT_OUTPUT_FLAG_CTS`
Expand Down Expand Up @@ -3193,6 +3197,8 @@ see :ref:`How METplus controls MET config file settings<metplus-control-met>`.
- climo_cdf.center_bins
* - :term:`GRID_STAT_CLIMO_CDF_WRITE_BINS`
- climo_cdf.write_bins
* - :term:`GRID_STAT_CLIMO_CDF_DIRECT_PROB`
- climo_cdf.direct_prob

**${METPLUS_OUTPUT_FLAG_DICT}**

Expand Down Expand Up @@ -5314,6 +5320,7 @@ Configuration
| :term:`POINT_STAT_CLIMO_CDF_BINS`
| :term:`POINT_STAT_CLIMO_CDF_CENTER_BINS`
| :term:`POINT_STAT_CLIMO_CDF_WRITE_BINS`
| :term:`POINT_STAT_CLIMO_CDF_DIRECT_PROB`
| :term:`POINT_STAT_OBS_QUALITY_INC`
| :term:`POINT_STAT_OBS_QUALITY_EXC`
| :term:`POINT_STAT_OUTPUT_FLAG_FHO`
Expand Down Expand Up @@ -5679,6 +5686,8 @@ see :ref:`How METplus controls MET config file settings<metplus-control-met>`.
- climo_cdf.center_bins
* - :term:`POINT_STAT_CLIMO_CDF_WRITE_BINS`
- climo_cdf.write_bins
* - :term:`POINT_STAT_CLIMO_CDF_DIRECT_PROB`
- climo_cdf.direct_prob

**${METPLUS_OBS_QUALITY_INC}**

Expand Down Expand Up @@ -5977,6 +5986,9 @@ METplus Configuration
| :term:`SERIES_ANALYSIS_CLIMO_STDEV_FILE_TYPE`
| :term:`SERIES_ANALYSIS_CLIMO_STDEV_USE_FCST`
| :term:`SERIES_ANALYSIS_CLIMO_STDEV_USE_OBS`
| :term:`SERIES_ANALYSIS_CLIMO_CDF_BINS`
| :term:`SERIES_ANALYSIS_CLIMO_CDF_CENTER_BINS`
| :term:`SERIES_ANALYSIS_CLIMO_CDF_DIRECT_PROB`
| :term:`SERIES_ANALYSIS_HSS_EC_VALUE`
| :term:`SERIES_ANALYSIS_OUTPUT_STATS_FHO`
| :term:`SERIES_ANALYSIS_OUTPUT_STATS_CTC`
Expand Down Expand Up @@ -6208,6 +6220,20 @@ see :ref:`How METplus controls MET config file settings<metplus-control-met>`.
* - :term:`SERIES_ANALYSIS_CLIMO_STDEV_FILE_TYPE`
- climo_stdev.file_type

**${METPLUS_CLIMO_CDF_DICT}**

.. list-table::
:widths: 5 5
:header-rows: 0

* - METplus Config(s)
- MET Config File
* - :term:`SERIES_ANALYSIS_CLIMO_CDF_BINS`
- climo_cdf.cdf_bins
* - :term:`SERIES_ANALYSIS_CLIMO_CDF_CENTER_BINS`
- climo_cdf.center_bins
* - :term:`SERIES_ANALYSIS_CLIMO_CDF_DIRECT_PROB`
- climo_cdf.direct_prob

**${METPLUS_BLOCK_SIZE}**

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -416,13 +416,17 @@ def test_handle_climo_file_variables(metplus_config, config_overrides,
({'ENSEMBLE_STAT_CLIMO_CDF_WRITE_BINS': 'False', },
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {write_bins = FALSE;}'}),

({'ENSEMBLE_STAT_CLIMO_CDF_DIRECT_PROB': 'False', },
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {direct_prob = FALSE;}'}),

({
'ENSEMBLE_STAT_CLIMO_CDF_CDF_BINS': '1',
'ENSEMBLE_STAT_CLIMO_CDF_CENTER_BINS': 'True',
'ENSEMBLE_STAT_CLIMO_CDF_WRITE_BINS': 'False',
'ENSEMBLE_STAT_CLIMO_CDF_DIRECT_PROB': 'False',
},
{
'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {cdf_bins = 1.0;center_bins = TRUE;write_bins = FALSE;}'}),
'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {cdf_bins = 1.0;center_bins = TRUE;write_bins = FALSE;direct_prob = FALSE;}'}),

({'ENSEMBLE_STAT_INTERP_VLD_THRESH': '0.8', },
{'METPLUS_INTERP_DICT': 'interp = {vld_thresh = 0.8;}'}),
Expand Down
6 changes: 5 additions & 1 deletion internal_tests/pytests/grid_stat/test_grid_stat_wrapper.py
Original file line number Diff line number Diff line change
Expand Up @@ -383,13 +383,17 @@ def test_handle_climo_file_variables(metplus_config, config_overrides,
({'GRID_STAT_CLIMO_CDF_WRITE_BINS': 'False', },
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {write_bins = FALSE;}'}),

({'GRID_STAT_CLIMO_CDF_DIRECT_PROB': 'False', },
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {direct_prob = FALSE;}'}),

({
'GRID_STAT_CLIMO_CDF_CDF_BINS': '1',
'GRID_STAT_CLIMO_CDF_CENTER_BINS': 'True',
'GRID_STAT_CLIMO_CDF_WRITE_BINS': 'False',
'GRID_STAT_CLIMO_CDF_DIRECT_PROB': 'False',
},
{
'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {cdf_bins = 1.0;center_bins = TRUE;write_bins = FALSE;}'}),
'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {cdf_bins = 1.0;center_bins = TRUE;write_bins = FALSE;direct_prob = FALSE;}'}),

({'GRID_STAT_INTERP_FIELD': 'NONE', },
{'METPLUS_INTERP_DICT': 'interp = {field = NONE;}'}),
Expand Down
6 changes: 5 additions & 1 deletion internal_tests/pytests/point_stat/test_point_stat_wrapper.py
Original file line number Diff line number Diff line change
Expand Up @@ -162,13 +162,17 @@ def test_met_dictionary_in_var_options(metplus_config):
({'POINT_STAT_CLIMO_CDF_WRITE_BINS': 'False', },
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {write_bins = FALSE;}'}),

({'POINT_STAT_CLIMO_CDF_DIRECT_PROB': 'False', },
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {direct_prob = FALSE;}'}),

({
'POINT_STAT_CLIMO_CDF_CDF_BINS': '1',
'POINT_STAT_CLIMO_CDF_CENTER_BINS': 'True',
'POINT_STAT_CLIMO_CDF_WRITE_BINS': 'False',
'POINT_STAT_CLIMO_CDF_DIRECT_PROB': 'False',
},
{
'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {cdf_bins = 1.0;center_bins = TRUE;write_bins = FALSE;}'}),
'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {cdf_bins = 1.0;center_bins = TRUE;write_bins = FALSE;direct_prob = FALSE;}'}),

({'POINT_STAT_OBS_QUALITY_INC': '2,3,4', },
{'METPLUS_OBS_QUALITY_INC': 'obs_quality_inc = ["2", "3", "4"];'}),
Expand Down
15 changes: 15 additions & 0 deletions internal_tests/pytests/series_analysis/test_series_analysis.py
Original file line number Diff line number Diff line change
Expand Up @@ -276,6 +276,21 @@ def set_minimum_config_settings(config):
({'SERIES_ANALYSIS_OBS_CAT_THRESH': '<=CDP33', },
{'METPLUS_OBS_CAT_THRESH': 'cat_thresh = [<=CDP33];'}),

({'SERIES_ANALYSIS_CLIMO_CDF_CDF_BINS': '1', },
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {cdf_bins = 1.0;}'}),

({'SERIES_ANALYSIS_CLIMO_CDF_CENTER_BINS': 'True', },
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {center_bins = TRUE;}'}),

({'SERIES_ANALYSIS_CLIMO_CDF_DIRECT_PROB': 'False', },
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {direct_prob = FALSE;}'}),

({'SERIES_ANALYSIS_CLIMO_CDF_CDF_BINS': '1',
'SERIES_ANALYSIS_CLIMO_CDF_CENTER_BINS': 'True',
'SERIES_ANALYSIS_CLIMO_CDF_DIRECT_PROB': 'False',
},
{'METPLUS_CLIMO_CDF_DICT': 'climo_cdf = {cdf_bins = 1.0;center_bins = TRUE;direct_prob = FALSE;}'}),

]
)
def test_series_analysis_single_field(metplus_config, config_overrides,
Expand Down
14 changes: 14 additions & 0 deletions metplus/wrappers/command_builder.py
Original file line number Diff line number Diff line change
Expand Up @@ -1843,3 +1843,17 @@ def get_config_file(self, default_config_file=None):
return get_wrapped_met_config_file(self.config,
self.app_name,
default_config_file)

def handle_climo_cdf_dict(self, write_bins=True):
items = {
'cdf_bins': ('float', None, None,
[f'{self.app_name.upper()}_CLIMO_CDF_BINS']),
'center_bins': 'bool',
}

# add write_bins unless it should be excluded
if write_bins:
items['write_bins'] = 'bool'

items['direct_prob'] = 'bool'
self.add_met_config_dict('climo_cdf', items)
8 changes: 0 additions & 8 deletions metplus/wrappers/compare_gridded_wrapper.py
Original file line number Diff line number Diff line change
Expand Up @@ -400,14 +400,6 @@ def get_command(self):
cmd += '-outdir {}'.format(self.outdir)
return cmd

def handle_climo_cdf_dict(self):
self.add_met_config_dict('climo_cdf', {
'cdf_bins': ('float', None, None,
[f'{self.app_name.upper()}_CLIMO_CDF_BINS']),
'center_bins': 'bool',
'write_bins': 'bool',
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Should we have a line for 'direct_prob' here?

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The red text shows that these lines were removed in the changes. The new version is found in command_builder.py

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Ha! Sorry for the confusion!

})

def handle_interp_dict(self, uses_field=False):
"""! Reads config variables for interp dictionary, i.e.
_INTERP_VLD_THRESH, _INTERP_SHAPE, _INTERP_METHOD, and
Expand Down
5 changes: 5 additions & 0 deletions metplus/wrappers/series_analysis_wrapper.py
Original file line number Diff line number Diff line change
Expand Up @@ -55,6 +55,7 @@ class SeriesAnalysisWrapper(RuntimeFreqWrapper):
'METPLUS_HSS_EC_VALUE',
'METPLUS_FCST_CAT_THRESH',
'METPLUS_OBS_CAT_THRESH',
'METPLUS_CLIMO_CDF_DICT',
]

# handle deprecated env vars used pre v4.0.0
Expand Down Expand Up @@ -366,6 +367,9 @@ def create_c_dict(self):
# get climatology config variables
self.handle_climo_dict()

# get climo_cdf dictionary
self.handle_climo_cdf_dict(write_bins=False)

self.add_met_config(name='hss_ec_value',
data_type='float',
metplus_configs=['SERIES_ANALYSIS_HSS_EC_VALUE'])
Expand Down Expand Up @@ -670,6 +674,7 @@ def _get_fcst_and_obs_path(self, time_info, storm_id, lead_group):
# set forecast lead to last lead in list to set in output filename
if leads:
time_info['lead'] = leads[-1]

if self.c_dict['USING_BOTH']:
both_path = do_string_sub(self.c_dict['BOTH_INPUT_FILE_LIST'],
**time_info)
Expand Down
3 changes: 3 additions & 0 deletions parm/met_config/SeriesAnalysisConfig_wrapped
Original file line number Diff line number Diff line change
Expand Up @@ -68,6 +68,9 @@ ${METPLUS_CLIMO_MEAN_DICT}
//climo_stdev = {
${METPLUS_CLIMO_STDEV_DICT}

//climo_cdf = {
${METPLUS_CLIMO_CDF_DICT}

////////////////////////////////////////////////////////////////////////////////

//
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -167,6 +167,7 @@ ENSEMBLE_STAT_ENS_PHIST_BIN_SIZE = 0.05
ENSEMBLE_STAT_CLIMO_CDF_BINS = 1
ENSEMBLE_STAT_CLIMO_CDF_CENTER_BINS = False
ENSEMBLE_STAT_CLIMO_CDF_WRITE_BINS = True
#ENSEMBLE_STAT_CLIMO_CDF_DIRECT_PROB =

ENSEMBLE_STAT_MASK_GRID = FULL
ENSEMBLE_STAT_MASK_POLY =
Expand Down
1 change: 1 addition & 0 deletions parm/use_cases/met_tool_wrapper/GridStat/GridStat.conf
Original file line number Diff line number Diff line change
Expand Up @@ -129,6 +129,7 @@ GRID_STAT_OUTPUT_PREFIX = {MODEL}_{CURRENT_FCST_NAME}_vs_{OBTYPE}_{CURRENT_OBS_N
#GRID_STAT_CLIMO_CDF_BINS = 1
#GRID_STAT_CLIMO_CDF_CENTER_BINS = False
#GRID_STAT_CLIMO_CDF_WRITE_BINS = True
#GRID_STAT_CLIMO_CDF_DIRECT_PROB =
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Why do we have commented-out defaults listed for all the other CLIMO_CDF options, but no the new DIRECT_PROB one?

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We should come up with a standard for handling this when we clean up all of the config files. I'm not sure if we have an issue for that, but we would not do that until the next development cycle (5.0.0). When I add support for a new config variables, I put a value so I can test setting the variable to see if it works with the MET app. After testing, I have been removing the value and comment out the variable. When I first added support for these other climo_cdf variables, I was leaving the value so users could see what type of value is expected for these variables. It would be good to be consistent but either way, the purpose of these comments variables are to show examples of all of the config variables that can be used in the basic use case.


#GRID_STAT_OUTPUT_FLAG_FHO = NONE
GRID_STAT_OUTPUT_FLAG_CTC = STAT
Expand Down
1 change: 1 addition & 0 deletions parm/use_cases/met_tool_wrapper/PointStat/PointStat.conf
Original file line number Diff line number Diff line change
Expand Up @@ -103,6 +103,7 @@ POINT_STAT_OUTPUT_FLAG_VL1L2 = STAT
#POINT_STAT_CLIMO_CDF_BINS = 1
#POINT_STAT_CLIMO_CDF_CENTER_BINS = False
#POINT_STAT_CLIMO_CDF_WRITE_BINS = True
#POINT_STAT_CLIMO_CDF_DIRECT_PROB =
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Why do we have commented-out defaults listed for all the other CLIMO_CDF options, but no the new DIRECT_PROB one?

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See comment in GridStat.conf


#POINT_STAT_HSS_EC_VALUE =

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -109,6 +109,10 @@ SERIES_ANALYSIS_IS_PAIRED = False
#SERIES_ANALYSIS_CLIMO_STDEV_HOUR_INTERVAL =
#SERIES_ANALYSIS_CLIMO_STDEV_FILE_TYPE =

#SERIES_ANALYSIS_CLIMO_CDF_BINS =
#SERIES_ANALYSIS_CLIMO_CDF_CENTER_BINS =
#SERIES_ANALYSIS_CLIMO_CDF_DIRECT_PROB =

#SERIES_ANALYSIS_HSS_EC_VALUE =

#FCST_SERIES_ANALYSIS_PROB_THRESH =
Expand Down