configuration adjustments

R/api_gdal.R

@@ -68,7 +68,7 @@
 #' @noRd
 #' @param file        File to be created (with path)
 #' @param base_file   File to be copied from (with path)
-#' @param param       GDAL parameters
+#' @param params       GDAL parameters
 #' @param quiet       TRUE/FALSE
 #' @returns           Called for side effects
 .gdal_translate <- function(file, base_file, params, quiet) {

check_package_cran.R

@@ -0,0 +1,60 @@
+# Prepare for CRAN ----
+
+# Update dependencies in DESCRIPTION
+attachment::att_amend_desc()
+
+# Run tests and examples outside of CRAN
+devtools::test()
+devtools::run_examples(run_dontrun = TRUE)
+
+# Check package as CRAN
+rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"))
+
+# Check content
+# remotes::install_github("ThinkR-open/checkhelper")
+#checkhelper::find_missing_tags()
+
+# Check spelling
+# usethis::use_spell_check()
+spelling::spell_check_package()
+
+# Check URL are correct
+# remotes::install_github("r-lib/urlchecker")
+urlchecker::url_check()
+urlchecker::url_update()
+
+# check on other distributions
+# _rhub
+devtools::check_rhub()
+rhub::check_for_cran()
+# _win devel
+devtools::check_win_devel()
+devtools::check_win_release()
+# Check reverse dependencies
+# remotes::install_github("r-lib/revdepcheck")
+usethis::use_git_ignore("revdep/")
+usethis::use_build_ignore("revdep/")
+
+devtools::revdep()
+library(revdepcheck)
+# In another session
+id <- rstudioapi::terminalExecute("Rscript -e 'revdepcheck::revdep_check(num_workers = 4)'")
+rstudioapi::terminalKill(id)
+# See outputs
+revdep_details(revdep = "pkg")
+revdep_summary()                 # table of results by package
+revdep_report() # in revdep/
+# Clean up when on CRAN
+revdep_reset()
+
+# Update NEWS
+# Bump version manually and add list of changes
+
+# Add comments for CRAN
+usethis::use_cran_comments(open = rlang::is_interactive())
+
+# Upgrade version number
+usethis::use_version(which = c("patch", "minor", "major", "dev")[1])
+
+# Verify you're ready for release, and release
+devtools::release()

inst/extdata/config_axelspace.yml

@@ -0,0 +1,96 @@
+sources:
+    AXELSPACE               :
+        s3_class            : ["stac_cube", "eo_cube", "raster_cube"]
+        service             : "STAC"
+        url                 : "https://brazildatacube.dpi.inpe.br/stac/"
+        collections         :
+            GRUS            : &grus
+                bands       :
+                    PAN     : &grus_pan
+                        missing_value : 0
+                        minimum_value : 1
+                        maximum_value : 10000
+                        scale_factor  : 0.0001
+                        offset_value  : 0
+                        resolution    : 2.5
+                        band_name     : "Panchromatic"
+                        data_type     : "INT2S"
+                    BLUE     : &grus_blue
+                        missing_value : 0
+                        minimum_value : 1
+                        maximum_value : 10000
+                        scale_factor  : 0.0001
+                        offset_value  : 0
+                        resolution   :  5
+                        band_name     : "Blue"
+                        data_type     : "INT2S"
+                    GREEN     :
+                        <<: *grus_blue
+                        band_name     : "Green"
+                    RED     :
+                        <<: *grus_blue
+                        band_name     : "Red"
+                    RED-EDGE     :
+                        <<: *grus_blue
+                        band_name     : "Red Edge"
+                    NIR     :
+                        <<: *grus_blue
+                        band_name     : "Near Infrared"
+                    CLOUD   : &bdc_awfi_cloud
+                        bit_mask      : false
+                        band_name     : "CMASK"
+                        values        :
+                            0         : "No Data"
+                            127       : "Clear Pixel"
+                            255       : "Cloud"
+                        interp_values : [0, 255]
+                        resolution   :  64
+                        data_type     : "INT1U"
+                satellite   : "CBERS-4"
+                sensor      : "WFI"
+                collection_name: "CB4-16D-2"
+                token_vars  :  ["BDC_ACCESS_KEY"]
+                open_data   : true
+                open_data_token : true
+                metadata_search : "tile"
+                ext_tolerance: 0.01
+                grid_system : "BDC-Large V2"
+            CBERS-WFI-8D    :
+                bands       :
+                    NDVI    :
+                        <<: *bdc_awfi_ndvi
+                        band_name     : "NDVI"
+                    EVI     :
+                        <<: *bdc_awfi_ndvi
+                        band_name     : "EVI"
+                    B13     :
+                        <<: *bdc_awfi_b13
+                        missing_value : -9999
+                        minimum_value : 0
+                        maximum_value : 10000
+                        scale_factor  : 0.0001
+                        offset_value  : 0
+                        resolution   :  64
+                        band_name     : "BAND13"
+                        data_type     : "INT2S"
+                    B14     :
+                        <<: *bdc_awfi_b13
+                        band_name     : "BAND14"
+                    B15     :
+                        <<: *bdc_awfi_b13
+                        band_name     : "BAND15"
+                    B16     :
+                        <<: *bdc_awfi_b13
+                        band_name     : "BAND16"
+                    CLOUD   :
+                        <<: *bdc_awfi_cloud
+                        band_name     : "CMASK"
+                satellite   : "CBERS-4-4A"
+                sensor      : "WFI"
+                collection_name: "CBERS-WFI_64_8D_LCF-1"
+                token_vars  :  ["BDC_ACCESS_KEY"]
+                open_data   : true
+                open_data_token : true
+                metadata_search : "tile"
+                ext_tolerance: 0.01
+                grid_system : "BDC-Large V2"

inst/extdata/config_internals.yml

@@ -1,13 +1,4 @@
 # Internal configuration parameters - relevant only to sits developers
-# s3 classes known to sits
-sits_s3_classes :   ["sits", "patterns", "predicted", "sits_model",
-                    "raster_cube", "probs_cube",
-                    "uncertainty_cube", "class_cube",
-                    "stac_cube", "bdc_cube", "aws_cube",
-                    "usgs_cube", "deafrica_cube"]
-
-# s3 classes resulting from classification and post-classification
-sits_s3_classes_proc :   ["probs_cube","uncertainty_cube", "class_cube", "variance_cube"]
 
 # bands resulting from classification and post-classification
 sits_results_bands : ["probs", "bayes", "uncert", "entropy",