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{lang}[foss/2020b,intel/2020b] SciPy-bundle v2020.11 w/ Python 3.8.6 #11629

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Original file line number Diff line number Diff line change
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# This easyconfig was created by Simon Branford of the BEAR Software team at the University of Birmingham.
easyblock = 'PythonPackage'

name = 'hypothesis'
version = '5.41.2'

homepage = "https://github.com/HypothesisWorks/hypothesis"
description = """Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized
by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets
you find more bugs in your code with less work."""

toolchain = {'name': 'GCCcore', 'version': '10.2.0'}

source_urls = [PYPI_SOURCE]
sources = [SOURCE_TAR_GZ]
checksums = ['f8c281355aaba1da696e40f1488c2bb47c42660424f5750daea45a85e2d047b3']

builddependencies = [('binutils', '2.35')]

dependencies = [('Python', '3.8.6')]

use_pip = True
download_dep_fail = True
sanity_pip_check = True

moduleclass = 'tools'
Original file line number Diff line number Diff line change
@@ -0,0 +1,54 @@
easyblock = 'PythonBundle'

name = 'SciPy-bundle'
version = '2020.11'

homepage = 'https://python.org/'
description = "Bundle of Python packages for scientific software"

toolchain = {'name': 'foss', 'version': '2020b'}
toolchainopts = {'pic': True, 'lowopt': True}

builddependencies = [('hypothesis', '5.41.2')]

dependencies = [
('Python', '3.8.6'),
('pybind11', '2.6.0'), # required by scipy
]

use_pip = True

exts_default_options = {'source_urls': [PYPI_SOURCE]}

# order is important!
exts_list = [
('numpy', '1.19.4', {
'source_tmpl': '%(name)s-%(version)s.zip',
'checksums': ['141ec3a3300ab89c7f2b0775289954d193cc8edb621ea05f99db9cb181530512'],
}),
('scipy', '1.5.4', {
'checksums': ['4a453d5e5689de62e5d38edf40af3f17560bfd63c9c5bd228c18c1f99afa155b'],
}),
('mpi4py', '3.0.3', {
'checksums': ['012d716c8b9ed1e513fcc4b18e5af16a8791f51e6d1716baccf988ad355c5a1f'],
}),
('numexpr', '2.7.1', {
'checksums': ['b0d239d9827e1bcee08344fd05835823bc60aff97232e35a928214d03ff802b1'],
}),
('Bottleneck', '1.3.2', {
'checksums': ['20179f0b66359792ea283b69aa16366419132f3b6cf3adadc0c48e2e8118e573'],
}),
('pandas', '1.1.4', {
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'checksums': ['a979d0404b135c63954dea79e6246c45dd45371a88631cdbb4877d844e6de3b6'],
}),
('mpmath', '1.1.0', {
'checksums': ['fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6'],
}),
('deap', '1.3.1', {
'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
}),
]

sanity_pip_check = True

moduleclass = 'lang'
Original file line number Diff line number Diff line change
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easyblock = 'PythonBundle'

name = 'SciPy-bundle'
version = '2020.11'

homepage = 'https://python.org/'
description = "Bundle of Python packages for scientific software"

toolchain = {'name': 'intel', 'version': '2020b'}
toolchainopts = {'pic': True, 'lowopt': True}

builddependencies = [('hypothesis', '5.41.2')]

dependencies = [
('Python', '3.8.6'),
('pybind11', '2.6.0'), # required by scipy
]

use_pip = True

exts_default_options = {'source_urls': [PYPI_SOURCE]}

# order is important!
exts_list = [
('numpy', '1.19.4', {
'source_tmpl': '%(name)s-%(version)s.zip',
'patches': ['numpy-1.18.2-mkl.patch'],
'checksums': [
'141ec3a3300ab89c7f2b0775289954d193cc8edb621ea05f99db9cb181530512', # numpy-1.19.4.zip
'ea25ad5c0148c1398d282f0424e642fb9815a1a80f4512659b018e2adc378bcf', # numpy-1.18.2-mkl.patch
],
}),
('scipy', '1.5.4', {
'checksums': ['4a453d5e5689de62e5d38edf40af3f17560bfd63c9c5bd228c18c1f99afa155b'],
}),
('mpi4py', '3.0.3', {
'checksums': ['012d716c8b9ed1e513fcc4b18e5af16a8791f51e6d1716baccf988ad355c5a1f'],
}),
('numexpr', '2.7.1', {
'checksums': ['b0d239d9827e1bcee08344fd05835823bc60aff97232e35a928214d03ff802b1'],
}),
('Bottleneck', '1.3.2', {
'checksums': ['20179f0b66359792ea283b69aa16366419132f3b6cf3adadc0c48e2e8118e573'],
}),
('pandas', '1.1.4', {
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'checksums': ['a979d0404b135c63954dea79e6246c45dd45371a88631cdbb4877d844e6de3b6'],
# strip out use of -Werror to avoid failing compilation due to Intel compiler warning
'preinstallopts': """sed -i 's@extra_compile_args = \["-Werror"\]@extra_compile_args = []@g' setup.py && """,
}),
('mpmath', '1.1.0', {
'checksums': ['fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6'],
}),
('deap', '1.3.1', {
'checksums': ['11f54493ceb54aae10dde676577ef59fc52d52f82729d5a12c90b0813c857a2f'],
}),
]

sanity_pip_check = True

moduleclass = 'lang'