{ai}[foss/2023a] Slideflow v3.0.1 w/ CUDA 12.1.1 #20857

lcniel · 2024-06-19T15:10:50Z

(created using eb --new-pr)

Requires #20853 #20854

lcniel · 2024-06-19T15:38:51Z

Test report by @lcniel
SUCCESS
Build succeeded for 3 out of 3 (1 easyconfigs in total)
vera14-4 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) Gold 6130 CPU @ 2.10GHz, Python 3.6.8
See https://gist.github.com/lcniel/3883036510c815e8d7b0ece3bf240b9c for a full test report.

easybuild/easyconfigs/s/Slideflow/Slideflow-2.3.1-foss-2023a-CUDA-12.1.1.eb

…UDA-12.1.1.eb Co-authored-by: Mikael Öhman <[email protected]>

lcniel · 2024-09-16T13:23:06Z

Test report by @lcniel
SUCCESS
Build succeeded for 52 out of 52 (1 easyconfigs in total)
alvis6-06 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) Gold 6338 CPU @ 2.00GHz, 1 x NVIDIA NVIDIA A40, 550.54.14, Python 3.6.8
See https://gist.github.com/lcniel/8125444628d51ea74bed17476c1bb8c0 for a full test report.

…asyconfigs into 20240619151046_new_pr_Slideflow231

lcniel · 2024-10-02T08:14:28Z

@Micket I will do an additional test build just to be sure.

lcniel · 2024-10-02T09:45:20Z

Test report by @lcniel
SUCCESS
Build succeeded for 33 out of 33 (1 easyconfigs in total)
alvis2-07 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) Gold 6226R CPU @ 2.90GHz, 1 x NVIDIA Tesla T4, 560.35.03, Python 3.6.8
See https://gist.github.com/lcniel/1572d4ea2381c45f4af53628f0b833c7 for a full test report.

Micket

We do have pandas and seaborn in easyconfigs already, do we have specific version requirements that neccesitates this?

lcniel · 2024-10-02T11:50:13Z

We do have pandas and seaborn in easyconfigs already, do we have specific version requirements that neccesitates this?

For this version, yes. It seems like due to a ticket opened by me, they later released a patch that makes it compatible with pandas 2+.

It seems like bumping the Slideflow version up would also allow a more recent Seaborn version to be used. So that's an option, but then we might break other dependencies. I will give it a try I suppose.

…ep.patch

…p.patch

…UDA-12.1.1.eb

Micket · 2024-10-02T12:13:32Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-10-02T12:20:09Z

@Micket: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20857 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20857 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4971

Test results coming soon (I hope)...

- notification for comment with ID 2388494069 processed

Message to humans: this is just bookkeeping information for me,
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boegelbot · 2024-10-02T12:25:00Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 3 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/2c6d1aaefa21aeb11ccc23577ca94943 for a full test report.

lcniel · 2024-10-02T12:26:12Z

OK, looks like I need to manually redo the patch, I need to wait for my build to finish so I can make sure the path is correct.

lcniel · 2024-10-02T12:48:40Z

Test report by @lcniel
FAILED
Build succeeded for 31 out of 32 (1 easyconfigs in total)
alvis2-18 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) Gold 6226R CPU @ 2.90GHz, 8 x NVIDIA Tesla T4, 560.35.03, Python 3.6.8
See https://gist.github.com/lcniel/88ef3df203c197c423c971b697b21a9f for a full test report.

lcniel · 2024-10-02T12:56:37Z

This takes care of patch issue, rebuilding Slideflow itself to verify that there are no other problems.

lcniel · 2024-10-02T14:22:06Z

Test report by @lcniel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
alvis2-18 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) Gold 6226R CPU @ 2.90GHz, 8 x NVIDIA Tesla T4, 560.35.03, Python 3.6.8
See https://gist.github.com/lcniel/7239bf28e98d2849857af4992838474f for a full test report.

lcniel · 2024-10-02T14:32:11Z

Test report by @lcniel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
alvis2-18 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) Gold 6226R CPU @ 2.90GHz, 8 x NVIDIA Tesla T4, 560.35.03, Python 3.6.8
See https://gist.github.com/lcniel/392e9d101dd497ffdf04a6bb70c14c2b for a full test report.

lcniel · 2024-10-02T15:14:38Z

Test report by @lcniel
SUCCESS
Build succeeded for 32 out of 32 (1 easyconfigs in total)
alvis3-25 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) Gold 6338 CPU @ 2.00GHz, 1 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.6.8
See https://gist.github.com/lcniel/676ba201240384872162daf7ee32931e for a full test report.

Micket · 2024-10-03T06:40:41Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-10-03T06:50:09Z

@Micket: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20857 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20857 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4974

Test results coming soon (I hope)...

- notification for comment with ID 2390639971 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-10-03T06:50:29Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/a920a62b3f95efec74c480dc9ef80dc3 for a full test report.

easybuild/easyconfigs/s/Slideflow/Slideflow-3.0.1-foss-2023a-CUDA-12.1.1.eb

…UDA-12.1.1.eb

Micket · 2024-10-03T07:10:12Z

@boegelbot please test @ jsc-zen3
EB_ARGS="--force-download=all"

boegelbot · 2024-10-03T07:20:08Z

@Micket: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20857 EB_ARGS="--force-download=all" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20857 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4975

Test results coming soon (I hope)...

- notification for comment with ID 2390683890 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-10-03T07:20:31Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/e7e229e08679bda198eaa20ce8d9a2e4 for a full test report.

lcniel · 2024-10-03T07:35:00Z

Is this an automated testing issue? I can't see why it wouldn't find the patch...

Micket · 2024-10-03T07:50:26Z

@boegelbot please test @ jsc-zen3
EB_ARGS="--force-download=sources"

boegelbot · 2024-10-03T08:00:09Z

@Micket: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20857 EB_ARGS="--force-download=sources" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20857 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4976

Test results coming soon (I hope)...

- notification for comment with ID 2390750672 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-10-03T08:12:10Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/3498f63cd777268fe75c790dc294070d for a full test report.

lcniel · 2024-10-03T09:01:53Z

@Micket Looks like an error with the runner itself, maybe a rerun of that particular test is enough? Something to open an issue about maybe.

== FAILED: Installation ended unsuccessfully (build directory: /tmp/runner/bcc6e402a898cc3f8887b9b422794e372cb39053/build/M4/1.4.18/system-system): build failed (first 300 chars): Unexpected error occurred when trying to download https://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=59e2ce0e6b46bb47ef81b68b600ed087e14fdaad to /tmp/sources/generic/eb_v4.9.5.dev0/ConfigureMake/config.guess: 'Failed to write to /tmp/sources/generic/eb_v4.9.5.dev0/Confi (took 23 secs)
== Results of the build can be found in the log file(s) /tmp/eb-3x1llh4w/easybuild-M4-1.4.18-20241003.085715.flbHz.log

…asyconfigs into 20240619151046_new_pr_Slideflow231

jfgrimm

minor nitpick

easybuild/easyconfigs/s/Slideflow/Slideflow-3.0.1-foss-2023a-CUDA-12.1.1.eb

…UDA-12.1.1.eb Co-authored-by: Jasper Grimm <[email protected]>

req changes made

jfgrimm · 2024-10-03T10:11:38Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-10-03T10:20:08Z

@jfgrimm: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20857 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20857 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4982

Test results coming soon (I hope)...

- notification for comment with ID 2391029410 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-10-03T10:31:31Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/29f94b92ebe50487d996371d9b21fb14 for a full test report.

jfgrimm · 2024-10-03T10:40:33Z

Going in, thanks @lcniel!

jfgrimm · 2024-10-03T11:57:58Z

Test report by @jfgrimm
SUCCESS
Build succeeded for 17 out of 17 (1 easyconfigs in total)
gpu26.viking2.yor.alces.network - Linux Rocky Linux 8.9, x86_64, AMD EPYC 7413 24-Core Processor, 1 x NVIDIA NVIDIA H100 PCIe, 535.161.08, Python 3.6.8
See https://gist.github.com/jfgrimm/2a40a8edd1e09927980d0bb7182a32a9 for a full test report.

adding easyconfigs: Slideflow-2.3.1-foss-2023a-CUDA-12.1.1.eb

3ea2f47

lcniel added 2 commits June 20, 2024 08:45

checksums, style

8300bfe

add patches

6d5296c

Micket requested changes Sep 10, 2024

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lcniel and others added 3 commits September 16, 2024 12:29

Update easybuild/easyconfigs/s/Slideflow/Slideflow-2.3.1-foss-2023a-C…

9c3c4c3

…UDA-12.1.1.eb Co-authored-by: Mikael Öhman <[email protected]>

Update easybuild/easyconfigs/s/Slideflow/Slideflow-2.3.1-foss-2023a-C…

dba8b67

…UDA-12.1.1.eb Co-authored-by: Mikael Öhman <[email protected]>

Update Slideflow-2.3.1-foss-2023a-CUDA-12.1.1.eb

1ba4fc9

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

d8f72c0

…asyconfigs into 20240619151046_new_pr_Slideflow231

lcniel requested a review from Micket September 30, 2024 15:49

Micket reviewed Oct 2, 2024

View reviewed changes

lcniel and others added 4 commits October 2, 2024 12:04

updated version

54b6bde

Delete easybuild/easyconfigs/s/Slideflow/Slideflow-2.3.1_fix-opencv-d…

ae76aba

…ep.patch

Delete easybuild/easyconfigs/s/Slideflow/Slideflow-2.3.1_fix-ninja-de…

d0990a3

…p.patch

Delete easybuild/easyconfigs/s/Slideflow/Slideflow-2.3.1-foss-2023a-C…

a876709

…UDA-12.1.1.eb

Micket changed the title ~~{ai}[foss/2023a] Slideflow v2.3.1 w/ CUDA 12.1.1~~ {ai}[foss/2023a] Slideflow v3.0.1 w/ CUDA 12.1.1 Oct 2, 2024

Micket added the new label Oct 2, 2024

Micket added this to the release after 4.9.4 milestone Oct 2, 2024

Fixed patch

35ae810

added triangle dep

a437b40

lcniel requested a review from Micket October 2, 2024 14:57

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…UDA-12.1.1.eb

Micket enabled auto-merge October 3, 2024 08:35

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

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…asyconfigs into 20240619151046_new_pr_Slideflow231

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…UDA-12.1.1.eb Co-authored-by: Jasper Grimm <[email protected]>

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jfgrimm merged commit ef56e11 into easybuilders:develop Oct 3, 2024
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{ai}[foss/2023a] Slideflow v3.0.1 w/ CUDA 12.1.1 #20857

{ai}[foss/2023a] Slideflow v3.0.1 w/ CUDA 12.1.1 #20857

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{ai}[foss/2023a] Slideflow v3.0.1 w/ CUDA 12.1.1 #20857

{ai}[foss/2023a] Slideflow v3.0.1 w/ CUDA 12.1.1 #20857

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