Bio-SamTools and its dependencies. SAMTools wrong compiler corrected (wa... #992
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…(was gcc instead of icc)
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Automatic reply from Jenkins: Can I test this? |
| @@ -23,6 +23,8 @@ toolchainopts = {'optarch': True, 'pic': True} | |||
| sources = [SOURCELOWER_TAR_BZ2] | |||
| source_urls = [('http://sourceforge.net/projects/samtools/files/%(namelower)s/%(version)s', 'download')] | |||
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| buildopts = 'CC="$CC" CFLAGS="$CFLAGS" ' | |||
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@cedric wrote the first bits originally, yet most likely it was me who transcribed it for ictce.
So, whomever of you is relying on samtools-0.1.18/ictce, can you comment on current status?
(I will certainly look at it eventually, but perhaps not at the speed you neet it).
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Jenkins: ok to test |
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Jenkins: test this please |
sync SAMtools easyconfigs, style fixes
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Test report by @boegel |
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welded into #1080 |
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Easyblock easybuilders/easybuild-easyblocks#450 needed.
Samtools was compiled with gcc, despite the ictce/intel toolchain. Most probably this is the situation in the case of SAMTools 0.1.18 versions as well.