Conform more to latest version of development

Docs/source/refs.bib

@@ -60,18 +60,6 @@ @article{Turner2013
 year = {2013}
 }
 
-@Inbook{WinskeInBook2023,
-author = {Winske, Dan and Karimabadi, Homa and Le, Ari Yitzchak and Omidi, Nojan Nick and Roytershteyn, Vadim and Stanier, Adam John},
-bookTitle = {Space and Astrophysical Plasma Simulation: Methods, Algorithms, and Applications},
-doi = {10.1007/978-3-031-11870-8_3},
-editor = {B{\"u}chner, J{\"o}rg},
-isbn = {978-3-031-11870-8},
-pages = {63--91},
-publisher = {Springer International Publishing},
-title = {{Hybrid-Kinetic Approach: Massless Electrons}},
-year = {2023}
-}
-
 @incollection{Nielson1976,
 author = {Clair W. Nielson and H. Ralph Lewis},
 booktitle = {Controlled Fusion},
@@ -289,28 +277,79 @@ @Inbook{VanLeerBookChapter1997
 year = {1997}
 }
 
+@article{Yakimenko2019,
+author = {Yakimenko, V. and Meuren, S. and Del Gaudio, F. and Baumann, C. and Fedotov, A. and Fiuza, F. and Grismayer, T. and Hogan, M. J. and Pukhov, A. and Silva, L. O. and White, G.},
+doi = {10.1103/PhysRevLett.122.190404},
+issue = {19},
+journal = {Phys. Rev. Lett.},
+month = {May},
+numpages = {7},
+pages = {190404},
+publisher = {American Physical Society},
+title = {Prospect of Studying Nonperturbative QED with Beam-Beam Collisions},
+volume = {122},
+year = {2019},
+}
+
+@article{Groenewald2023,
+author = {Groenewald, R. E. and Veksler, A. and Ceccherini, F. and Necas, A. and Nicks, B. S. and Barnes, D. C. and Tajima, T. and Dettrick, S. A.},
+doi = {10.1063/5.0178288},
+issn = {1070-664X},
+journal = {Physics of Plasmas},
+month = {Dec},
+number = {12},
+pages = {122508},
+title = {{Accelerated kinetic model for global macro stability studies of high-beta fusion reactors}},
+volume = {30},
+year = {2023},
+}
+
+@article{PerezPOP2012,
+author = {Pérez, F. and Gremillet, L. and Decoster, A. and Drouin, M. and Lefebvre, E.},
+doi = {10.1063/1.4742167},
+issn = {1070-664X},
+journal = {Physics of Plasmas},
+month = {Aug},
+number = {8},
+pages = {083104},
+title = {{Improved modeling of relativistic collisions and collisional ionization in particle-in-cell codes}},
+volume = {19},
+year = {2012}
+}
+
+@article{HigginsonJCP2019,
+author = {Drew Pitney Higginson and Anthony Link and Andrea Schmidt},
+doi = {10.1016/j.jcp.2019.03.020},
+issn = {0021-9991},
+journal = {Journal of Computational Physics},
+keywords = {Particle-in-cell, Nuclear Fusion, Monte Carlo methods, Inertial confinement fusion, Thermonuclear Fusion},
+month = {Jul},
+pages = {439--453},
+title = {{A pairwise nuclear fusion algorithm for weighted particle-in-cell plasma simulations}},
+volume = {388},
+year = {2019}
+}
+
 @article{VerboncoeurJCP2001,
 author = {J.P. Verboncoeur},
-doi = {https://doi.org/10.1006/jcph.2001.6923},
+doi = {10.1006/jcph.2001.6923},
 issn = {0021-9991},
 journal = {Journal of Computational Physics},
 number = {1},
 pages = {421-427},
 title = {{Symmetric Spline Weighting for Charge and Current Density in Particle Simulation}},
-url = {https://www.sciencedirect.com/science/article/pii/S0021999101969232},
 volume = {174},
 year = {2001}
 }
 
 @article{MuravievCPC2021,
 author = {A. Muraviev and A. Bashinov and E. Efimenko and V. Volokitin and I. Meyerov and A. Gonoskov},
-doi = {https://doi.org/10.1016/j.cpc.2021.107826},
+doi = {10.1016/j.cpc.2021.107826},
 issn = {0010-4655},
 journal = {Computer Physics Communications},
 keywords = {Particle-in-cell, Resampling, Merging, Thinning, QED cascades},
 pages = {107826},
 title = {{Strategies for particle resampling in PIC simulations}},
-url = {https://www.sciencedirect.com/science/article/pii/S0010465521000035},
 volume = {262},
 year = {2021}
 }
@@ -325,39 +364,10 @@ @article{AkturkOE2004
 pages = {4399--4410},
 publisher = {Optica Publishing Group},
 title = {{Pulse-front tilt caused by spatial and temporal chirp}},
-url = {https://opg.optica.org/oe/abstract.cfm?URI=oe-12-19-4399},
 volume = {12},
 year = {2004}
 }
 
-@article{PerezPOP2012,
-author = {Pérez, F. and Gremillet, L. and Decoster, A. and Drouin, M. and Lefebvre, E.},
-doi = {10.1063/1.4742167},
-eprint = {https://pubs.aip.org/aip/pop/article-pdf/doi/10.1063/1.4742167/13891570/083104\_1\_online.pdf},
-issn = {1070-664X},
-journal = {Physics of Plasmas},
-month = {08},
-number = {8},
-pages = {083104},
-title = {{Improved modeling of relativistic collisions and collisional ionization in particle-in-cell codes}},
-url = {https://doi.org/10.1063/1.4742167},
-volume = {19},
-year = {2012}
-}
-
-@article{HigginsonJCP2019,
-author = {Drew Pitney Higginson and Anthony Link and Andrea Schmidt},
-doi = {https://doi.org/10.1016/j.jcp.2019.03.020},
-issn = {0021-9991},
-journal = {Journal of Computational Physics},
-keywords = {Particle-in-cell, Nuclear Fusion, Monte Carlo methods, Inertial confinement fusion, Thermonuclear Fusion},
-pages = {439-453},
-title = {{A pairwise nuclear fusion algorithm for weighted particle-in-cell plasma simulations}},
-url = {https://www.sciencedirect.com/science/article/pii/S0021999119302037},
-volume = {388},
-year = {2019}
-}
-
 @inproceedings{XiaoIEEE2005,
 author = {Tian Xiao and Liu, Q.H.},
 booktitle = {2005 IEEE Antennas and Propagation Society International Symposium},
@@ -377,36 +387,7 @@ @article{GrismayerNJP2021
 number = {9},
 pages = {095005},
 publisher = {IOP Publishing},
-title = {Quantum Electrodynamics vacuum polarization solver},
-url = {https://dx.doi.org/10.1088/1367-2630/ac2004},
+title = {{Quantum Electrodynamics vacuum polarization solver}},
 volume = {23},
 year = {2021}
 }
-
-@article{Yakimenko2019,
-  title = {Prospect of Studying Nonperturbative QED with Beam-Beam Collisions},
-  author = {Yakimenko, V. and Meuren, S. and Del Gaudio, F. and Baumann, C. and Fedotov, A. and Fiuza, F. and Grismayer, T. and Hogan, M. J. and Pukhov, A. and Silva, L. O. and White, G.},
-  journal = {Phys. Rev. Lett.},
-  volume = {122},
-  issue = {19},
-  pages = {190404},
-  numpages = {7},
-  year = {2019},
-  month = {May},
-  publisher = {American Physical Society},
-  doi = {10.1103/PhysRevLett.122.190404},
-  url = {https://link.aps.org/doi/10.1103/PhysRevLett.122.190404}
-}
-
-@article{Groenewald2023,
-author = {Groenewald, R. E. and Veksler, A. and Ceccherini, F. and Necas, A. and Nicks, B. S. and Barnes, D. C. and Tajima, T. and Dettrick, S. A.},
-title = "{Accelerated kinetic model for global macro stability studies of high-beta fusion reactors}",
-journal = {Physics of Plasmas},
-volume = {30},
-number = {12},
-pages = {122508},
-year = {2023},
-month = {12},
-issn = {1070-664X},
-doi = {10.1063/5.0178288},
-}

Docs/source/usage/parameters.rst

@@ -1795,9 +1795,7 @@ Details about the collision models can be found in the :ref:`theory section <the
       kinetic species. See :ref:`DSMC section <theory-collisions-dsmc>`.
     - ``background_mcc`` for collisions between particles and a neutral background.
       This is a relativistic Monte Carlo treatment for particles colliding
-      with a neutral background gas. The implementation follows the so-called
-      null collision strategy discussed for example in :cite:t:`param-Birdsall1991`.
-      See also :ref:`collisions section <theory-collisions>`.
+      with a neutral background gas. See :ref:`MCC section <theory-collisions-mcc>`.
     - ``background_stopping`` for slowing of ions due to collisions with electrons or ions.
       This implements the approximate formulae as derived in Introduction to Plasma Physics,
       from Goldston and Rutherford, section 14.2.
@@ -1837,8 +1835,8 @@ Details about the collision models can be found in the :ref:`theory section <the
     More specifically, in a fusion reaction between two macroparticles with weight ``w_1`` and ``w_2``,
     the weight of the product macroparticles will be ``min(w_1,w_2)/fusion_multiplier``.
     (And the weights of the reactant macroparticles are reduced correspondingly after the reaction.)
-    See :cite:t:`param-HigginsonJCP2019`
-    for more details. The default value of ``fusion_multiplier`` is 1.
+    See :cite:t:`param-HigginsonJCP2019` for more details.
+    The default value of ``fusion_multiplier`` is 1.
 
 * ``<collision_name>.fusion_probability_threshold`` (`float`) optional.
     Only for ``nuclearfusion``.