#2370 - "Erase" tool

#2360 - "Select" tool

- added select and erase tools
- implemented DrawingEntitiesManager and RenderersManager which controls entities parameters changes and render
- added rootDir to tsconfig of core package

example/src/PolymerToggler/PolymerToggler.tsx

@@ -22,7 +22,7 @@ export interface PolymerTogglerProps {
 
 const PolymerToggler = ({ toggle }: PolymerTogglerProps): JSX.Element => {
   return (
-    <label className={styles.switch} data-testid="PolymerToggler">
+    <label className={styles.switch} data-testid="polymer-toggler">
       <input type="checkbox" onChange={(e) => toggle(e.target.checked)} />
       <span className={styles.slider} />
     </label>

ketcher-autotests/constants/testIdConstants.ts

@@ -2,7 +2,7 @@ const PEPTIDES_TAB = 'PEPTIDES_TAB';
 const RNA_TAB = 'RNA_TAB';
 const CHEM_TAB = 'CHEM_TAB';
 const FAVORITES_TAB = 'FAVORITES_TAB';
-const POLYMER_TOGGLER = 'PolymerToggler';
+const POLYMER_TOGGLER = 'polymer-toggler';
 const SUGAR = 'rna-builder-slot--sugar';
 const BASE = 'rna-builder-slot--base';
 const PHOSPHATE = 'rna-builder-slot--phosphate';

ketcher-autotests/tests/Macromolecule-editor/Erase-Tool/erase-tool.spec.ts

@@ -0,0 +1,55 @@
+import { test } from '@playwright/test';
+import {
+  addMonomerToCanvas,
+  selectEraseTool,
+  selectSingleBondTool,
+  takeEditorScreenshot,
+} from '@utils';
+import { turnOnMacromoleculesEditor } from '@utils/macromolecules';
+import { bondTwoMonomers } from '@utils/macromolecules/polymerBond';
+/* eslint-disable no-magic-numbers */
+
+test.describe('Erase Tool', () => {
+  test.beforeEach(async ({ page }) => {
+    await page.goto('');
+    await turnOnMacromoleculesEditor(page);
+  });
+  test.skip('Delete monomer bonded with another monomers', async ({ page }) => {
+    /* 
+    Test case: #2370 - "Erase" tool for macromolecules editor
+    Description: Erase Tool
+    */
+
+    // Create 4 peptides on canvas
+    const MONOMER_NAME = 'Tza___3-thiazolylalanine';
+    const MONOMER_ALIAS = 'Tza';
+    await addMonomerToCanvas(page, MONOMER_NAME, 300, 300);
+    await addMonomerToCanvas(page, MONOMER_NAME, 400, 400);
+    await addMonomerToCanvas(page, MONOMER_NAME, 500, 500);
+    await addMonomerToCanvas(page, MONOMER_NAME, 500, 200);
+
+    // Get 4 peptides locators
+    const peptides = await page.getByText(MONOMER_ALIAS).locator('..');
+    const peptide1 = peptides.nth(0);
+    const peptide2 = peptides.nth(1);
+    const peptide3 = peptides.nth(2);
+    const peptide4 = peptides.nth(3);
+
+    // Select bond tool
+    await selectSingleBondTool(page);
+
+    // Create bonds between peptides
+    await bondTwoMonomers(page, peptide1, peptide2);
+    await bondTwoMonomers(page, peptide3, peptide2);
+    await bondTwoMonomers(page, peptide3, peptide4);
+
+    await takeEditorScreenshot(page);
+
+    await selectEraseTool(page);
+
+    // Delete peptide linked with two other peptides by bonds
+    await peptide3.click();
+
+    await takeEditorScreenshot(page);
+  });
+});

ketcher-autotests/tests/Macromolecule-editor/Polymer-Bond-Tool/polymer-bond-tool.spec.ts

@@ -1,5 +1,6 @@
-import { test, expect } from '@playwright/test';
+import { test } from '@playwright/test';
 import { selectSingleBondTool, waitForPageInit } from '@utils';
+import { turnOnMacromoleculesEditor } from '@utils/macromolecules';
 /* eslint-disable no-magic-numbers */
 
 test.describe('Polymer Bond Tool', () => {
@@ -12,8 +13,7 @@ test.describe('Polymer Bond Tool', () => {
     Description: Polymer bond tool
     */
 
-    await expect(page.getByTestId('PolymerToggler')).toBeVisible();
-    await page.getByTestId('PolymerToggler').click();
+    await turnOnMacromoleculesEditor(page);
 
     // Choose peptide
     await page.getByText('Tza').click();
@@ -25,7 +25,7 @@ test.describe('Polymer Bond Tool', () => {
     await page.mouse.click(500, 200);
 
     // Get 4 peptides locators
-    const peptides = await page.getByText('Tza');
+    const peptides = await page.getByText('Tza').locator('..');
     const peptide1 = peptides.nth(0);
     const peptide2 = peptides.nth(1);
     const peptide3 = peptides.nth(2);
@@ -69,8 +69,7 @@ test.describe('Polymer Bond Tool', () => {
     Description: Polymer bond tool
     */
 
-    await expect(page.getByTestId('PolymerToggler')).toBeVisible();
-    await page.getByTestId('PolymerToggler').click();
+    await turnOnMacromoleculesEditor(page);
 
     // Choose chems
     await page.getByText('CHEM').click();
@@ -81,7 +80,7 @@ test.describe('Polymer Bond Tool', () => {
     await page.mouse.click(400, 400);
 
     // Get 2 chems locators
-    const chems = await page.getByText('hxy');
+    const chems = await page.getByText('hxy').locator('..');
     const chem1 = chems.nth(0);
     const chem2 = chems.nth(1);
 

ketcher-autotests/tests/Macromolecule-editor/RNAEditor/add-default-presets.spec.ts

@@ -1,4 +1,5 @@
-import { test, expect } from '@playwright/test';
+import { turnOnMacromoleculesEditor } from '@utils/macromolecules';
+import { test } from '@playwright/test';
 import { waitForPageInit } from '@utils/common';
 
 test.describe('Macromolecules default presets', () => {
@@ -10,8 +11,7 @@ test.describe('Macromolecules default presets', () => {
     Test case: #2934 - rna builder: add default presets
     Description: Switch to Polymer Editor
     */
-    await expect(page.getByTestId('PolymerToggler')).toBeVisible();
-    await page.getByTestId('PolymerToggler').click();
+    await turnOnMacromoleculesEditor(page);
     await page.getByText('RNA').click();
 
     await page.getByTestId('cancel-btn').click();
@@ -25,8 +25,7 @@ test.describe('Macromolecules default presets', () => {
     /* 
     Test case: #2507 - Add RNA monomers to canvas (by click)
     */
-    await expect(page.getByTestId('PolymerToggler')).toBeVisible();
-    await page.getByTestId('PolymerToggler').click();
+    await turnOnMacromoleculesEditor(page);
     await page.getByText('RNA').click();
     await page.getByTestId('cancel-btn').click();
 

ketcher-autotests/tests/Macromolecule-editor/Rectangle-Selection-Tool/rectangle-selection-tool.spec.ts

@@ -0,0 +1,72 @@
+import { test } from '@playwright/test';
+import {
+  addMonomerToCanvas,
+  selectEraseTool,
+  selectRectangleArea,
+  selectRectangleSelectionTool,
+  selectSingleBondTool,
+} from '@utils';
+import { turnOnMacromoleculesEditor } from '@utils/macromolecules';
+import { bondTwoMonomers } from '@utils/macromolecules/polymerBond';
+/* eslint-disable no-magic-numbers */
+
+test.describe('Rectangle Selection Tool', () => {
+  test.beforeEach(async ({ page }) => {
+    await page.goto('');
+    await turnOnMacromoleculesEditor(page);
+  });
+  test.skip('Select monomer and bonds and then erase', async ({ page }) => {
+    /* 
+    Test case: #2360 - "Select" tool for Macromolecules editor
+    Description: Rectangle Selection Tool
+    */
+
+    // Create 4 peptides on canvas
+    const MONOMER_NAME = 'Tza___3-thiazolylalanine';
+    const MONOMER_ALIAS = 'Tza';
+    await addMonomerToCanvas(page, MONOMER_NAME, 300, 300);
+    await addMonomerToCanvas(page, MONOMER_NAME, 400, 400);
+    await addMonomerToCanvas(page, MONOMER_NAME, 500, 500);
+    await addMonomerToCanvas(page, MONOMER_NAME, 500, 200);
+
+    // Get 4 peptides locators
+    const peptides = await page.getByText(MONOMER_ALIAS).locator('..');
+    const peptide1 = peptides.nth(0);
+    const peptide2 = peptides.nth(1);
+    const peptide3 = peptides.nth(2);
+    const peptide4 = peptides.nth(3);
+
+    // Select bond tool
+    await selectSingleBondTool(page);
+
+    // Create bonds between peptides
+    await bondTwoMonomers(page, peptide1, peptide2);
+    await bondTwoMonomers(page, peptide3, peptide2);
+    await bondTwoMonomers(page, peptide3, peptide4);
+
+    await page.screenshot({
+      path: 'tests/Macromolecule-editor/screenshots/rectangle-selection-tool.png',
+    });
+
+    await selectRectangleSelectionTool(page);
+
+    // Coordinates for rectangle selection
+    const startX = 100;
+    const startY = 100;
+    const endX = 500;
+    const endY = 500;
+
+    await selectRectangleArea(page, startX, startY, endX, endY);
+
+    await page.screenshot({
+      path: 'tests/Macromolecule-editor/screenshots/rectangle-selection-tool2.png',
+    });
+
+    // Erase selected elements
+    await selectEraseTool(page);
+
+    await page.screenshot({
+      path: 'tests/Macromolecule-editor/screenshots/rectangle-selection-tool3.png',
+    });
+  });
+});

ketcher-autotests/tests/utils/canvas/helpers.ts

@@ -134,3 +134,13 @@ export async function resetAllSettingsToDefault(page: Page) {
   await pressButton(page, 'Reset');
   await pressButton(page, 'Apply');
 }
+
+export async function addMonomerToCanvas(
+  page: Page,
+  monomerFullName: string,
+  positionX: number,
+  positionY: number,
+) {
+  await page.getByTestId(monomerFullName).click();
+  await page.mouse.click(positionX, positionY);
+}

ketcher-autotests/tests/utils/canvas/tools/helpers.ts

@@ -47,6 +47,30 @@ export async function selectSingleBondTool(page: Page) {
   await bondToolButton.click();
 }
 
+export async function selectEraseTool(page: Page) {
+  const bondToolButton = page.locator(`button[title*="Erase"]`);
+  await bondToolButton.click();
+}
+
+export async function selectRectangleSelectionTool(page: Page) {
+  const bondToolButton = page.locator(`button[title*="select-rectangle"]`);
+  await bondToolButton.click();
+}
+
+export async function selectRectangleArea(
+  page: Page,
+  startX: number,
+  startY: number,
+  endX: number,
+  endY: number,
+) {
+  await selectRectangleSelectionTool(page);
+  await page.mouse.move(startX, startY);
+  await page.mouse.down();
+  await page.mouse.move(endX, endY);
+  await page.mouse.up();
+}
+
 export async function selectTopPanelButton(
   buttonName: TopPanelButton,
   page: Page,

ketcher-autotests/tests/utils/macromolecules/index.ts

@@ -0,0 +1,7 @@
+import { expect, Page } from '@playwright/test';
+import { POLYMER_TOGGLER } from '@constants/testIdConstants';
+
+export async function turnOnMacromoleculesEditor(page: Page) {
+  await expect(page.getByTestId(POLYMER_TOGGLER)).toBeVisible();
+  await page.getByTestId(POLYMER_TOGGLER).click();
+}

ketcher-autotests/tests/utils/macromolecules/polymerBond.ts

@@ -0,0 +1,12 @@
+import { Locator, Page } from '@playwright/test';
+
+export async function bondTwoMonomers(
+  page: Page,
+  firstMonomerElement: Locator,
+  secondMonomerElement: Locator,
+) {
+  await firstMonomerElement.hover();
+  await page.mouse.down();
+  await secondMonomerElement.hover();
+  await page.mouse.up();
+}

packages/ketcher-core/.eslintrc.json

@@ -1,6 +1,10 @@
 {
   "root": false,
   "extends": "plugin:jest/recommended",
+  "rules": {
+    "@typescript-eslint/no-empty-function": "off",
+    "no-useless-constructor": "off"
+  },
   "overrides": [
     {
       "files": [

packages/ketcher-core/__tests__/application/editor/tools/SelectRectangleTool.test.ts

@@ -0,0 +1,72 @@
+import { CoreEditor } from 'application/editor';
+import { PeptideRenderer } from 'application/render/renderers/PeptideRenderer';
+import {
+  getFinishedPolymerBond,
+  peptideMonomerItem,
+  polymerEditorTheme,
+} from '../../../mock-data';
+import { createPolymerEditorCanvas } from '../../../helpers/dom';
+import { SelectRectangle } from 'application/editor/tools/SelectRectangle';
+
+jest.mock('d3', () => {
+  return {
+    brush() {
+      return {
+        on() {},
+      };
+    },
+    select() {
+      return {
+        call() {
+          return this;
+        },
+        insert() {
+          return this;
+        },
+        select() {
+          return this;
+        },
+        attr() {
+          return this;
+        },
+        style() {
+          return this;
+        },
+      };
+    },
+  };
+});
+
+describe('Select Rectangle Tool', () => {
+  it('should select drawing entity on mousedown', () => {
+    const polymerBond = getFinishedPolymerBond(0, 0, 10, 10);
+    const event = {
+      target: {
+        __data__: polymerBond.renderer,
+      },
+    };
+    const selectRectangleTool = new SelectRectangle(
+      new CoreEditor({
+        theme: polymerEditorTheme,
+        canvas: createPolymerEditorCanvas(),
+      }),
+    );
+
+    expect(polymerBond.selected).toBeFalsy();
+    selectRectangleTool.mousedown(event);
+    expect(polymerBond.selected).toBeTruthy();
+  });
+
+  it('should initiate the render of peptide mousedown', () => {
+    const canvas: SVGSVGElement = createPolymerEditorCanvas();
+    const editor: CoreEditor = new CoreEditor({
+      canvas,
+      theme: polymerEditorTheme,
+    });
+    const onShow = jest.fn();
+    jest.spyOn(PeptideRenderer.prototype, 'show').mockImplementation(onShow);
+    editor.events.selectMonomer.dispatch(peptideMonomerItem);
+    canvas.dispatchEvent(new Event('mouseover', { bubbles: true }));
+    expect(onShow).toHaveBeenCalled();
+  });
+});

packages/ketcher-core/__tests__/application/render/renderers/__snapshots__/PeptideRenderer.test.ts.snap

@@ -6,6 +6,7 @@ exports[`PeptideRenderer should render peptide 1`] = `
   id="polymer-editor-canvas"
   width="500"
 >
+  <defs />
   <g
     transform="translate(0, 0) scale(1)"
     transition="transform 0.2s"
@@ -20,6 +21,7 @@ exports[`PeptideRenderer should render peptide 1`] = `
       font-size="12px"
       font-weight="700"
       line-height="12px"
+      pointer-events="none"
       style="cursor: pointer; user-select: none;"
       x="0"
       y="10"