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Testing notebooks
erdc · Sep 14, 2018 · d025742 · d025742
1 parent ea2d856
commit d025742
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Showing 32 changed files with 2,439 additions and 1,066 deletions.
diff --git a/conda_environment.yml b/conda_environment.yml
@@ -11,7 +11,7 @@ name: quest
 
 channels:
     - conda-forge
-    - erdc
+    - pyviz/label/dev
 
 dependencies:
     - python=3
@@ -44,6 +44,7 @@ dependencies:
     # test dependencies
     - pytest-cov
     - coveralls
+    - nbval
 
     # docs dependencies
     - sphinx
@@ -56,3 +57,9 @@ dependencies:
     - pillow
     - requests
     - whitebox_tools
+
+    # notebook examples dependencies
+    - holoviews
+    - geoviews
+    - parambokeh
+    - cartopy
diff --git a/...HA Model with Watershed Delineation.ipynb → ...HA Model with Watershed Delineation.ipynb b/...HA Model with Watershed Delineation.ipynb → ...HA Model with Watershed Delineation.ipynb
@@ -31,11 +31,21 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
-   "outputs": [],
+   "execution_count": 1,
+   "metadata": {},
+   "outputs": [
+    {
+     "ename": "ModuleNotFoundError",
+     "evalue": "No module named 'gsshapy'",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[0;31mModuleNotFoundError\u001b[0m                       Traceback (most recent call last)",
+      "\u001b[0;32m<ipython-input-1-29db8e3d9ca6>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[1;32m      4\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m      5\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mgeopandas\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0mgpd\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 6\u001b[0;31m \u001b[0;32mfrom\u001b[0m \u001b[0mgsshapy\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mmodeling\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mGSSHAModel\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m      7\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mquest\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m      8\u001b[0m \u001b[0;32mfrom\u001b[0m \u001b[0mmatplotlib\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mcolors\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcm\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mpyplot\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0mplt\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
+      "\u001b[0;31mModuleNotFoundError\u001b[0m: No module named 'gsshapy'"
+     ]
+    }
+   ],
    "source": [
     "%matplotlib inline\n",
     "from datetime import datetime, timedelta\n",
@@ -52,9 +62,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "VICKSBURG = 'vicksburg'\n",
@@ -86,9 +94,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "def download_data(service_uri, bbox, collection):\n",
@@ -125,9 +131,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "elevation_service = 'svc://usgs-ned:13-arc-second'\n",
@@ -149,9 +153,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "## Delete all collections\n",
@@ -192,9 +194,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "def watershed_delineation(elevation, outlet):\n",
@@ -264,9 +264,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "# read in elevation data\n",
@@ -351,9 +349,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "# make the directory for the output\n",
@@ -376,9 +372,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "# workaround for crs not being saved correctly\n",
@@ -399,9 +393,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "elevation_file_path = quest.api.get_metadata(elevation)[elevation]['file_path']\n",
@@ -411,12 +403,9 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
-    "\n",
     "# generate GSSHA model files\n",
     "model = GSSHAModel(project_name=gssha_model_name,\n",
     "                   project_directory=gssha_model_directory,\n",
@@ -446,9 +435,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "metadata": {},
    "outputs": [],
    "source": []
   }
@@ -469,9 +456,9 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.4"
+   "version": "3.6.6"
   }
  },
  "nbformat": 4,
- "nbformat_minor": 2
+ "nbformat_minor": 1
 }
diff --git a/examples/notebooks/Create GSSHA Model.ipynb → examples/broken/Create GSSHA Model.ipynb b/examples/notebooks/Create GSSHA Model.ipynb → examples/broken/Create GSSHA Model.ipynb
diff --git a/examples/notebooks/Run GSSHA Model.ipynb → examples/broken/Run GSSHA Model.ipynb b/examples/notebooks/Run GSSHA Model.ipynb → examples/broken/Run GSSHA Model.ipynb
@@ -87,7 +87,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.5"
+   "version": "3.6.6"
   }
  },
  "nbformat": 4,