ekin immutable, disable ekin checkpointing

src/core/grid_based_algorithms/electrokinetics.hpp

@@ -147,40 +147,38 @@ int ek_print_vtk_lbforce_density(char *filename);
 int ek_lb_print_vtk_density(char *filename);
 int ek_lb_print_vtk_velocity(char *filename);
 int ek_init();
-int ek_set_agrid(float agrid);
-int ek_set_lb_density(float lb_density);
-int ek_set_viscosity(float viscosity);
-int ek_set_lb_ext_force_density(float lb_ext_force_dens_x,
-                                float lb_ext_force_dens_y,
-                                float lb_ext_force_dens_z);
-int ek_set_friction(float friction);
-int ek_set_T(float T);
-int ek_set_prefactor(float prefactor);
-int ek_set_electrostatics_coupling(bool electrostatics_coupling);
+void ek_set_agrid(float agrid);
+void ek_set_lb_density(float lb_density);
+void ek_set_viscosity(float viscosity);
+void ek_set_lb_ext_force_density(float lb_ext_force_dens_x,
+                                 float lb_ext_force_dens_y,
+                                 float lb_ext_force_dens_z);
+void ek_set_friction(float friction);
+void ek_set_T(float T);
+void ek_set_prefactor(float prefactor);
+void ek_set_electrostatics_coupling(bool electrostatics_coupling);
 void ek_calculate_electrostatic_coupling();
-int ek_set_bulk_viscosity(float bulk_viscosity);
-int ek_set_gamma_odd(float gamma_odd);
-int ek_set_gamma_even(float gamma_even);
-int ek_set_density(int species, float density);
-int ek_set_D(int species, float D);
-int ek_set_valency(int species, float valency);
-int ek_set_ext_force_density(int species, float ext_force_density_x,
-                             float ext_force_density_y,
-                             float ext_force_density_z);
-int ek_set_stencil(int stencil);
-int ek_set_advection(bool advection);
-int ek_set_fluidcoupling(bool ideal_contribution);
-int ek_set_fluctuations(bool fluctuations);
-int ek_set_fluctuation_amplitude(float fluctuation_amplitude);
+void ek_set_bulk_viscosity(float bulk_viscosity);
+void ek_set_gamma_odd(float gamma_odd);
+void ek_set_gamma_even(float gamma_even);
+void ek_set_density(int species, float density);
+void ek_set_D(int species, float D);
+void ek_set_valency(int species, float valency);
+void ek_set_ext_force_density(int species, float ext_force_density_x,
+                              float ext_force_density_y,
+                              float ext_force_density_z);
+void ek_set_stencil(int stencil);
+void ek_set_advection(bool advection);
+void ek_set_fluidcoupling(bool ideal_contribution);
+void ek_set_fluctuations(bool fluctuations);
+void ek_set_fluctuation_amplitude(float fluctuation_amplitude);
 void ek_set_rng_state(uint64_t counter);
 int ek_node_get_density(int species, int x, int y, int z, double *density);
 int ek_node_get_flux(int species, int x, int y, int z, double *flux);
 int ek_node_get_potential(int x, int y, int z, double *potential);
 int ek_node_set_density(int species, int x, int y, int z, double density);
 float ek_calculate_net_charge();
 int ek_neutralize_system(int species);
-int ek_save_checkpoint(char *filename, char *lb_filename);
-int ek_load_checkpoint(char *filename);
 
 #ifdef EK_BOUNDARIES
 void ek_gather_wallcharge_species_density(float *wallcharge_species_density,

src/core/grid_based_algorithms/electrokinetics_cuda.cu

@@ -50,6 +50,7 @@
 #include <iostream>
 #include <limits>
 #include <sstream>
+#include <stdexcept>
 #include <string>
 #include <vector>
 
@@ -3640,149 +3641,130 @@ void ek_print_lbpar() {
   printf("}\n");
 }
 
-int ek_set_agrid(float agrid) {
+inline void ek_setter_throw_if_initialized() {
+  if (ek_initialized)
+    throw std::runtime_error(
+        "Electrokinetics parameters cannot be set after initialisation");
+};
 
+void ek_set_agrid(float agrid) {
+  ek_setter_throw_if_initialized();
   ek_parameters.agrid = agrid;
-  return 0;
 }
 
-int ek_set_lb_density(float lb_density) {
-
+void ek_set_lb_density(float lb_density) {
+  ek_setter_throw_if_initialized();
   ek_parameters.lb_density = lb_density;
-  return 0;
 }
 
-int ek_set_prefactor(float prefactor) {
-
+void ek_set_prefactor(float prefactor) {
+  ek_setter_throw_if_initialized();
   ek_parameters.prefactor = prefactor;
-  return 0;
 }
 
-int ek_set_electrostatics_coupling(bool electrostatics_coupling) {
+void ek_set_electrostatics_coupling(bool electrostatics_coupling) {
+  ek_setter_throw_if_initialized();
   ek_parameters.es_coupling = electrostatics_coupling;
-  return 0;
 }
 
-int ek_set_viscosity(float viscosity) {
-
+void ek_set_viscosity(float viscosity) {
+  ek_setter_throw_if_initialized();
   ek_parameters.viscosity = viscosity;
-  return 0;
 }
 
-int ek_set_lb_ext_force_density(float lb_ext_force_dens_x,
-                                float lb_ext_force_dens_y,
-                                float lb_ext_force_dens_z) {
+void ek_set_lb_ext_force_density(float lb_ext_force_dens_x,
+                                 float lb_ext_force_dens_y,
+                                 float lb_ext_force_dens_z) {
+  ek_setter_throw_if_initialized();
   ek_parameters.lb_ext_force_density[0] = lb_ext_force_dens_x;
   ek_parameters.lb_ext_force_density[1] = lb_ext_force_dens_y;
   ek_parameters.lb_ext_force_density[2] = lb_ext_force_dens_z;
-  return 0;
 }
 
-int ek_set_friction(float friction) {
-
+void ek_set_friction(float friction) {
+  ek_setter_throw_if_initialized();
   ek_parameters.friction = friction;
-  return 0;
 }
 
-int ek_set_bulk_viscosity(float bulk_viscosity) {
-
+void ek_set_bulk_viscosity(float bulk_viscosity) {
+  ek_setter_throw_if_initialized();
   ek_parameters.bulk_viscosity = bulk_viscosity;
-  return 0;
 }
 
-int ek_set_gamma_odd(float gamma_odd) {
-
+void ek_set_gamma_odd(float gamma_odd) {
+  ek_setter_throw_if_initialized();
   ek_parameters.gamma_odd = gamma_odd;
-  return 0;
 }
 
-int ek_set_gamma_even(float gamma_even) {
+void ek_set_gamma_even(float gamma_even) {
 
+  ek_setter_throw_if_initialized();
   ek_parameters.gamma_even = gamma_even;
-  return 0;
 }
 
-int ek_set_stencil(int stencil) {
+void ek_set_stencil(int stencil) {
+  ek_setter_throw_if_initialized();
   if (!ek_parameters.fluidcoupling_ideal_contribution)
-    return 1; // combination not implemented
-
+    throw std::runtime_error(
+        "Combination of stencil and fluid coupling not implmented.");
   ek_parameters.stencil = stencil;
-  return 0;
 }
 
-int ek_set_advection(bool advection) {
+void ek_set_advection(bool advection) {
+  ek_setter_throw_if_initialized();
   ek_parameters.advection = advection;
-  return 0;
 }
 
-int ek_set_fluctuations(bool fluctuations) {
+void ek_set_fluctuations(bool fluctuations) {
+  ek_setter_throw_if_initialized();
   ek_parameters.fluctuations = fluctuations;
-  return 0;
 }
 
-int ek_set_fluctuation_amplitude(float fluctuation_amplitude) {
+void ek_set_fluctuation_amplitude(float fluctuation_amplitude) {
+  ek_setter_throw_if_initialized();
   ek_parameters.fluctuation_amplitude = fluctuation_amplitude;
-  return 0;
 }
 
-int ek_set_fluidcoupling(bool ideal_contribution) {
+void ek_set_fluidcoupling(bool ideal_contribution) {
+  ek_setter_throw_if_initialized();
   if (ek_parameters.stencil != 0)
-    return 1; // combination not implemented
-
+    throw std::runtime_error(
+        "Combination of stencil and fluid coupling not implemented.");
   ek_parameters.fluidcoupling_ideal_contribution = ideal_contribution;
-  return 0;
 }
 
-int ek_set_density(int species, float density) {
+void ek_set_T(float T) {
+  ek_setter_throw_if_initialized();
+  ek_parameters.T = T;
+}
 
+void ek_set_density(int species, float density) {
   ek_init_species(species);
-
   ek_parameters.density[ek_parameters.species_index[species]] = density;
-
-  return 0;
 }
 
-int ek_set_D(int species, float D) {
-
+void ek_set_D(int species, float D) {
   ek_init_species(species);
-
   ek_parameters.D[ek_parameters.species_index[species]] = D;
   ek_parameters.d[ek_parameters.species_index[species]] =
       D / (1.0f + 2.0f * sqrt(2.0f));
-
-  return 0;
 }
 
-int ek_set_T(float T) {
-
-  ek_parameters.T = T;
-
-  return 0;
-}
-
-int ek_set_valency(int species, float valency) {
-
+void ek_set_valency(int species, float valency) {
   ek_init_species(species);
-
   ek_parameters.valency[ek_parameters.species_index[species]] = valency;
-
-  return 0;
 }
 
-int ek_set_ext_force_density(int species, float ext_force_density_x,
-                             float ext_force_density_y,
-                             float ext_force_density_z) {
-
+void ek_set_ext_force_density(int species, float ext_force_density_x,
+                              float ext_force_density_y,
+                              float ext_force_density_z) {
   ek_init_species(species);
-
   ek_parameters.ext_force_density[0][ek_parameters.species_index[species]] =
       ext_force_density_x;
   ek_parameters.ext_force_density[1][ek_parameters.species_index[species]] =
       ext_force_density_y;
   ek_parameters.ext_force_density[2][ek_parameters.species_index[species]] =
       ext_force_density_z;
-
-  return 0;
 }
 
 struct ek_charge_of_particle {
@@ -3866,57 +3848,6 @@ int ek_neutralize_system(int species) {
   return 0;
 }
 
-int ek_save_checkpoint(char *filename, char *lb_filename) {
-  std::ofstream fout(filename, std::ofstream::binary);
-  std::vector<float> densities(ek_parameters.number_of_nodes);
-  auto const nchars =
-      static_cast<std::streamsize>(densities.size() * sizeof(float));
-
-  for (unsigned i = 0; i < ek_parameters.number_of_species; i++) {
-    cuda_safe_mem(cudaMemcpy(densities.data(), ek_parameters.rho[i],
-                             densities.size() * sizeof(float),
-                             cudaMemcpyDeviceToHost));
-
-    if (!fout.write(reinterpret_cast<char *>(densities.data()), nchars)) {
-      fout.close();
-      return 1;
-    }
-  }
-
-  fout.close();
-
-  lb_lbfluid_save_checkpoint(lb_filename, true);
-  return 0;
-}
-
-int ek_load_checkpoint(char *filename) {
-  std::string fname(filename);
-  std::ifstream fin((const char *)(fname + ".ek").c_str(),
-                    std::ifstream::binary);
-  std::vector<float> densities(ek_parameters.number_of_nodes);
-  auto const nchars =
-      static_cast<std::streamsize>(densities.size() * sizeof(float));
-
-  for (unsigned i = 0; i < ek_parameters.number_of_species; i++) {
-    if (!fin.read(reinterpret_cast<char *>(densities.data()), nchars)) {
-      fin.close();
-      return 1;
-    }
-
-    cuda_safe_mem(cudaMemcpy(ek_parameters.rho[i], densities.data(),
-                             densities.size() * sizeof(float),
-                             cudaMemcpyHostToDevice));
-  }
-
-  fin.close();
-
-  lb_lbfluid_load_checkpoint((char *)(fname + ".lb").c_str(), true);
-
-  ek_integrate_electrostatics();
-
-  return 0;
-}
-
 void ek_set_rng_state(uint64_t counter) {
   if (ek_initialized)
     philox_counter = Utils::Counter<uint64_t>(counter);

src/python/espressomd/electrokinetics.pxd

@@ -136,33 +136,31 @@ IF ELECTROKINETICS and CUDA:
         int ek_lb_print_vtk_density(char * filename)
         int ek_lb_print_vtk_velocity(char * filename)
         int ek_init()
-        int ek_set_agrid(float agrid)
-        int ek_set_lb_density(float lb_density)
-        int ek_set_viscosity(float viscosity)
-        int ek_set_friction(float friction)
-        int ek_set_lb_ext_force_density(float lb_ext_force_dens_x, float lb_ext_force_dens_y, float lb_ext_force_dens_z)
-        int ek_set_T(float T)
-        int ek_set_prefactor(float prefactor)
-        int ek_set_bulk_viscosity(float bulk_viscosity)
-        int ek_set_gamma_odd(float gamma_odd)
-        int ek_set_gamma_even(float gamma_even)
-        int ek_set_density(int species, float density)
-        int ek_set_D(int species, float D)
-        int ek_set_valency(int species, float valency)
-        int ek_set_ext_force_density(int species, float ext_force_density_x, float ext_force_density_y, float ext_force_density_z)
-        int ek_set_stencil(int stencil)
-        int ek_set_advection(bool advection)
-        int ek_set_fluctuations(bool fluctuations)
-        int ek_set_fluctuation_amplitude(float fluctuation_amplitude)
-        int ek_set_fluidcoupling(bool ideal_contribution)
+        void ek_set_agrid(float agrid) except +
+        void ek_set_lb_density(float lb_density) except +
+        void ek_set_viscosity(float viscosity) except +
+        void ek_set_friction(float friction) except +
+        void ek_set_lb_ext_force_density(float lb_ext_force_dens_x, float lb_ext_force_dens_y, float lb_ext_force_dens_z) except +
+        void ek_set_T(float T) except +
+        void ek_set_prefactor(float prefactor) except +
+        void ek_set_bulk_viscosity(float bulk_viscosity) except +
+        void ek_set_gamma_odd(float gamma_odd) except +
+        void ek_set_gamma_even(float gamma_even) except +
+        void ek_set_density(int species, float density)
+        void ek_set_D(int species, float D)
+        void ek_set_valency(int species, float valency)
+        void ek_set_ext_force_density(int species, float ext_force_density_x, float ext_force_density_y, float ext_force_density_z)
+        void ek_set_stencil(int stencil) except +
+        void ek_set_advection(bool advection) except +
+        void ek_set_fluctuations(bool fluctuations) except +
+        void ek_set_fluctuation_amplitude(float fluctuation_amplitude) except +
+        void ek_set_fluidcoupling(bool ideal_contribution) except +
+        void ek_set_electrostatics_coupling(bool electrostatics_coupling) except +
         int ek_node_get_density(int species, int x, int y, int z, double * density)
         int ek_node_get_flux(int species, int x, int y, int z, double * flux)
         int ek_node_get_potential(int x, int y, int z, double * potential)
         int ek_node_set_density(int species, int x, int y, int z, double density)
         float ek_calculate_net_charge()
         int ek_neutralize_system(int species)
-        int ek_save_checkpoint(char * filename, char * lb_filename)
-        int ek_load_checkpoint(char * filename)
 
-        int ek_set_electrostatics_coupling(bool electrostatics_coupling)
         int ek_print_vtk_particle_potential(char * filename)