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maintainer: Escape module python in wrapper script #3238

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merged 1 commit into from
Oct 11, 2019
Merged

maintainer: Escape module python in wrapper script #3238

merged 1 commit into from
Oct 11, 2019

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fweik
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@fweik fweik commented Oct 7, 2019

Fixes #3237.

Description of changes:

  • Added quotes around the module path in python wrapper script.

@fweik fweik requested a review from jngrad October 7, 2019 20:04
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codecov bot commented Oct 7, 2019

Codecov Report

Merging #3238 into python will not change coverage.
The diff coverage is n/a.

Impacted file tree graph

@@          Coverage Diff           @@
##           python   #3238   +/-   ##
======================================
  Coverage      85%     85%           
======================================
  Files         528     528           
  Lines       25805   25805           
======================================
  Hits        22150   22150           
  Misses       3655    3655

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@jngrad jngrad added this to the Espresso 4.1.1 milestone Oct 7, 2019
@jngrad jngrad mentioned this pull request Oct 8, 2019
@fweik fweik added the BugFix label Oct 8, 2019
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bors r+

bors bot added a commit that referenced this pull request Oct 11, 2019
3238: maintainer: Escape module python in wrapper script r=KaiSzuttor a=fweik

Fixes #3237.

Description of changes:
 - Added quotes around the module path in python wrapper script.


Co-authored-by: Florian Weik <[email protected]>
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jngrad commented Oct 11, 2019

The staging commit ended up outside a branch and could not be reached from the CI.

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jngrad commented Oct 11, 2019

bors cancel

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jngrad commented Oct 11, 2019

bors r-

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bors bot commented Oct 11, 2019

Canceled

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jngrad commented Oct 11, 2019

bors r+

bors bot added a commit that referenced this pull request Oct 11, 2019
3234: Fix mpiio with stdlibc++ range checking r=fweik a=mkuron

Fixes #3230. Reported by @junghans.

When mpiio was used but no bonds were present, we would still try to copy zero bonds from a zero-length vector. This triggered an assertion when stdlibc++ range checking was enabled.

Please tag for cherry-picking into 4.1.1.

3236: ESS2019 installation guide updates r=KaiSzuttor a=mkuron

Lessons learned today:

- We require MPI 3 because we depend on const-correctness in a few places. That means that OpenMPI 1.6.5 and lower are not supported anymore.
- Installing the ROCm driver breaks access to /dev/kfd, causing hwloc initialization during `mpiexec` to hang. Rebooting helps.
- Add matplotlib, ipython and jupyter to the Mac install guide.
- Homebrew now defaults to Python 3, requires manually enabling cython, and it's unclear whether the hdf5 package still supports MPI (Homebrew/homebrew-core#26974)
- Anaconda (~/anaconda[23]) and python.org packages (/Library/Python and /usr/local/bin) are also sources of conflict

Please tag for the 4.1.1 release

3238: maintainer: Escape module python in wrapper script r=jngrad a=fweik

Fixes #3237.

Description of changes:
 - Added quotes around the module path in python wrapper script.


Co-authored-by: Michael Kuron <[email protected]>
Co-authored-by: Michael Kuron <[email protected]>
Co-authored-by: Kai Szuttor <[email protected]>
Co-authored-by: Florian Weik <[email protected]>
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jngrad commented Oct 11, 2019

seriously? not only bors fails the merge and fails to catch the CI failure webhook, it also randomly spawns duplicate CI pipelines for already canceled batches? https://gitlab.icp.uni-stuttgart.de/espressomd/espresso/commit/6dbcec3c35fd5f4e98fcf23a6160ab0d3012bf13/pipelines?ref=staging

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jngrad commented Oct 11, 2019

bors r-
(failed CI)

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bors bot commented Oct 11, 2019

Canceled

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jngrad commented Oct 11, 2019

bors r+

bors bot added a commit that referenced this pull request Oct 11, 2019
3234: Fix mpiio with stdlibc++ range checking r=fweik a=mkuron

Fixes #3230. Reported by @junghans.

When mpiio was used but no bonds were present, we would still try to copy zero bonds from a zero-length vector. This triggered an assertion when stdlibc++ range checking was enabled.

Please tag for cherry-picking into 4.1.1.

3236: ESS2019 installation guide updates r=KaiSzuttor a=mkuron

Lessons learned today:

- We require MPI 3 because we depend on const-correctness in a few places. That means that OpenMPI 1.6.5 and lower are not supported anymore.
- Installing the ROCm driver breaks access to /dev/kfd, causing hwloc initialization during `mpiexec` to hang. Rebooting helps.
- Add matplotlib, ipython and jupyter to the Mac install guide.
- Homebrew now defaults to Python 3, requires manually enabling cython, and it's unclear whether the hdf5 package still supports MPI (Homebrew/homebrew-core#26974)
- Anaconda (~/anaconda[23]) and python.org packages (/Library/Python and /usr/local/bin) are also sources of conflict

Please tag for the 4.1.1 release

3238: maintainer: Escape module python in wrapper script r=jngrad a=fweik

Fixes #3237.

Description of changes:
 - Added quotes around the module path in python wrapper script.


Co-authored-by: Michael Kuron <[email protected]>
Co-authored-by: Michael Kuron <[email protected]>
Co-authored-by: Kai Szuttor <[email protected]>
Co-authored-by: Florian Weik <[email protected]>
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bors bot commented Oct 11, 2019

Build succeeded

@bors bors bot merged commit f2ec866 into espressomd:python Oct 11, 2019
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Paths not properly escaped in {i,}pypresso wrapper script
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