Schema Inferencing should happen at apply time #1646

mavysavydav · 2021-06-13T00:03:39Z

What this PR does / why we need it:
#1645

Which issue(s) this PR fixes:

Does this PR introduce a user-facing change?:

None

feast-ci-bot · 2021-06-13T00:03:48Z

Hi @mavysavydav. Thanks for your PR.

I'm waiting for a feast-dev member to verify that this patch is reasonable to test. If it is, they should reply with /ok-to-test on its own line. Until that is done, I will not automatically test new commits in this PR, but the usual testing commands by org members will still work. Regular contributors should join the org to skip this step.

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codecov-commenter · 2021-06-13T00:06:42Z

Codecov Report

Merging #1646 (9a854bf) into master (a708915) will decrease coverage by 0.02%.
The diff coverage is 89.70%.

@@            Coverage Diff             @@
##           master    #1646      +/-   ##
==========================================
- Coverage   83.54%   83.51%   -0.03%     
==========================================
  Files          71       71              
  Lines        6173     6195      +22     
==========================================
+ Hits         5157     5174      +17     
- Misses       1016     1021       +5

Flag	Coverage Δ
integrationtests	`83.43% <89.70%> (-0.03%)`	⬇️
unittests	`76.10% <39.70%> (-0.15%)`	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
sdk/python/feast/repo_operations.py	`31.70% <25.00%> (-0.48%)`	⬇️
sdk/python/feast/data_source.py	`78.15% <75.00%> (-0.63%)`	⬇️
sdk/python/feast/feature_view.py	`89.10% <90.00%> (+0.22%)`	⬆️
sdk/python/feast/inference.py	`93.47% <92.30%> (-1.98%)`	⬇️
sdk/python/feast/errors.py	`68.75% <100.00%> (+2.08%)`	⬆️
sdk/python/feast/feature_store.py	`93.04% <100.00%> (+0.09%)`	⬆️
sdk/python/tests/test_inference.py	`100.00% <100.00%> (ø)`
sdk/python/tests/utils/data_source_utils.py	`100.00% <100.00%> (ø)`
sdk/python/feast/type_map.py	`41.25% <0.00%> (-1.40%)`	⬇️

Continue to review full report at Codecov.

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achals · 2021-06-13T00:43:57Z

/ok-to-test

achals

Thanks for the PR @mavysavydav ! Left some comments about some cases that I wasn't sure are covered elsewhere in the codebase or not. Looks good otherwise!

achals · 2021-06-14T16:31:14Z

sdk/python/feast/data_source.py

@@ -598,7 +563,7 @@ def __init__(
        self._file_options = FileOptions(file_format=file_format, file_url=file_url)

        super().__init__(
-            event_timestamp_column or self._infer_event_timestamp_column(r"^timestamp"),
+            event_timestamp_column or "",


can this just be None instead of an empty string?

yep can delete the "or ""' part. Just need to change default value for event_timestamp_column of base class (DataSource) to None instead of "". Was hesitant to change base class param since didn't know if the use of "" was intentional.

oh actually, it seems like the data source base class doesn't have event_timestamp_column as optional so its type is str instead of Option[str]. The subclasses constructors use Option[str] so when passing to the supers' constructor need to handle the type checking and or "" turns the type from a Option[str] to str. I'll add comments to make it clear this is for type checking.

Could we make the event_timestamp_column optional in the base data source class? I think that would be reasonable if possible.

yep can do. Was thinking that not all subclasses of DataSource base class is guaranteed to have inference so maybe from an interface point of view, it's good to communicate that DataSource actually needs a event_timestamp_column.

resolved on slack. Achal - "I think that the subclasses can add additional assertions as per their requirements, but the base class should be more broad". Will make the change

achals · 2021-06-14T16:31:39Z

sdk/python/feast/data_source.py

@@ -672,8 +637,7 @@ def __init__(
        self._bigquery_options = BigQueryOptions(table_ref=table_ref, query=query)

        super().__init__(
-            event_timestamp_column
-            or self._infer_event_timestamp_column("TIMESTAMP|DATETIME"),
+            event_timestamp_column or "",


Same comment, any reason to use an empty string instead of None?

sdk/python/feast/inference.py

sdk/python/feast/feature_view.py

codyjlin · 2021-06-14T16:46:49Z

sdk/python/feast/repo_operations.py

+    infer_event_timestamp_column_for_data_sources(
+        [view.input for view in repo.feature_views]
+    )
+    for view in repo.feature_views:
+        view.infer_features_from_input_source()
+


Is there an ordering requirement that these be put up here? I think that in lines 162-166 below, we validate if the data sources are even supported (and in #1627, whether the BQ tables even exist). I'm happy to change the order in #1627 later, but wanted to ask now about whether order matters.

mavysavydav · 2021-06-16T00:09:58Z

/retest

mavysavydav · 2021-06-16T00:14:59Z

Unsure why telemetry is failing @achals

Signed-off-by: David Y Liu <[email protected]>

…es in place Signed-off-by: David Y Liu <[email protected]>

Signed-off-by: David Y Liu <[email protected]>

achals · 2021-06-18T18:26:04Z

/retest

achals · 2021-06-18T19:10:39Z

Thanks for the patience @mavysavydav! I only have one suggestion, and I think this will be good to merge.

Signed-off-by: David Y Liu <[email protected]>

achals

/lgtm

feast-ci-bot · 2021-06-18T20:24:11Z

[APPROVALNOTIFIER] This PR is APPROVED

This pull-request has been approved by: achals, mavysavydav

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mavysavydav · 2021-06-18T21:17:15Z

/kind bug

* wip1 Signed-off-by: David Y Liu <[email protected]> * just need to do clean up Signed-off-by: David Y Liu <[email protected]> * linted Signed-off-by: David Y Liu <[email protected]> * improve test coverage Signed-off-by: David Y Liu <[email protected]> * changed placement of inference methods in repo_operation apply_total Signed-off-by: David Y Liu <[email protected]> * updated inference method name + changed to void return since it updates in place Signed-off-by: David Y Liu <[email protected]> * fixed integration test and added comments Signed-off-by: David Y Liu <[email protected]> * Made DataSource event_timestamp_column optional Signed-off-by: David Y Liu <[email protected]> Signed-off-by: Mwad22 <[email protected]>

@tsotnet

…on to include feature view name in feature naming. (#1641) * test Signed-off-by: David Y Liu <[email protected]> Signed-off-by: Mwad22 <[email protected]> * refactored existing tests to test full_feature_names feature on data retreival, added new tests also. Signed-off-by: Mwad22 <[email protected]> * removed full_feature_names usage from quickstart and README to have more simple examples. Resolved failing tests. Signed-off-by: Mwad22 <[email protected]> * Update CHANGELOG for Feast v0.10.8 Signed-off-by: Mwad22 <[email protected]> * GitBook: [master] 2 pages modified Signed-off-by: Mwad22 <[email protected]> * Schema Inferencing should happen at apply time (#1646) * wip1 Signed-off-by: David Y Liu <[email protected]> * just need to do clean up Signed-off-by: David Y Liu <[email protected]> * linted Signed-off-by: David Y Liu <[email protected]> * improve test coverage Signed-off-by: David Y Liu <[email protected]> * changed placement of inference methods in repo_operation apply_total Signed-off-by: David Y Liu <[email protected]> * updated inference method name + changed to void return since it updates in place Signed-off-by: David Y Liu <[email protected]> * fixed integration test and added comments Signed-off-by: David Y Liu <[email protected]> * Made DataSource event_timestamp_column optional Signed-off-by: David Y Liu <[email protected]> Signed-off-by: Mwad22 <[email protected]> * GitBook: [master] 80 pages modified Signed-off-by: Mwad22 <[email protected]> * GitBook: [master] 80 pages modified Signed-off-by: Mwad22 <[email protected]> * Provide descriptive error on invalid table reference (#1627) * Initial commit to catch nonexistent table Signed-off-by: Cody Lin <[email protected]> Signed-off-by: Cody Lin <[email protected]> * simplify nonexistent BQ table test Signed-off-by: Cody Lin <[email protected]> * clean up table_exists exception Signed-off-by: Cody Lin <[email protected]> * remove unneeded variable Signed-off-by: Cody Lin <[email protected]> * function name change to _assert_table_exists Signed-off-by: Cody Lin <[email protected]> * Initial commit to catch nonexistent table Signed-off-by: Cody Lin <[email protected]> Signed-off-by: Cody Lin <[email protected]> * simplify nonexistent BQ table test Signed-off-by: Cody Lin <[email protected]> * clean up table_exists exception Signed-off-by: Cody Lin <[email protected]> * function name change to _assert_table_exists Signed-off-by: Cody Lin <[email protected]> * fix lint errors and rebase Signed-off-by: Cody Lin <[email protected]> * Fix get_table(None) error Signed-off-by: Cody Lin <[email protected]> * custom exception for both missing file and BQ source Signed-off-by: Cody Lin <[email protected]> * revert FileSource checks Signed-off-by: Cody Lin <[email protected]> * Use DataSourceNotFoundException instead of subclassing Signed-off-by: Cody Lin <[email protected]> * Moved assert_table_exists out of the BQ constructor to apply_total Signed-off-by: Cody Lin <[email protected]> * rename test and test asset Signed-off-by: Cody Lin <[email protected]> * move validate logic back to data_source Signed-off-by: Cody Lin <[email protected]> * fixed tests Signed-off-by: Cody Lin <[email protected]> * Set pytest.integration for tests that access BQ Signed-off-by: Cody Lin <[email protected]> * Import pytest in failed test files Signed-off-by: Cody Lin <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Refactor OnlineStoreConfig classes into owning modules (#1649) * Refactor OnlineStoreConfig classes into owning modules Signed-off-by: Achal Shah <[email protected]> * make format Signed-off-by: Achal Shah <[email protected]> * Move redis too Signed-off-by: Achal Shah <[email protected]> * update test_telemetery Signed-off-by: Achal Shah <[email protected]> * add a create_repo_config method that should be called instead of RepoConfig ctor directly Signed-off-by: Achal Shah <[email protected]> * fix the table reference in repo_operations Signed-off-by: Achal Shah <[email protected]> * reuse create_repo_config Signed-off-by: Achal Shah <[email protected]> Remove redis provider reference * CR comments Signed-off-by: Achal Shah <[email protected]> * Remove create_repo_config in favor of __init__ Signed-off-by: Achal Shah <[email protected]> * make format Signed-off-by: Achal Shah <[email protected]> * Remove print statement Signed-off-by: Achal Shah <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Possibility to specify a project for BigQuery queries (#1656) Signed-off-by: Matt Delacour <[email protected]> Co-authored-by: Achal Shah <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Refactor OfflineStoreConfig classes into their owning modules (#1657) * Refactor OfflineStoreConfig classes into their owning modules Signed-off-by: Achal Shah <[email protected]> * Fix error string Signed-off-by: Achal Shah <[email protected]> * Generic error class Signed-off-by: Achal Shah <[email protected]> * Merge conflicts Signed-off-by: Achal Shah <[email protected]> * make the store type work, and add a test that uses the fully qualified name of the OnlineStore Signed-off-by: Achal Shah <[email protected]> * Address comments from previous PR Signed-off-by: Achal Shah <[email protected]> * CR updates Signed-off-by: Achal Shah <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Run python unit tests in parallel (#1652) Signed-off-by: Achal Shah <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Rename telemetry to usage (#1660) * Rename telemetry to usage Signed-off-by: Tsotne Tabidze <[email protected]> * Update docs Signed-off-by: Tsotne Tabidze <[email protected]> * Update .prow and infra Signed-off-by: Tsotne Tabidze <[email protected]> * Rename file Signed-off-by: Tsotne Tabidze <[email protected]> * Change url Signed-off-by: Tsotne Tabidze <[email protected]> * Re-add telemetry.md for backwards-compatibility Signed-off-by: Tsotne Tabidze <[email protected]> Signed-off-by: Mwad22 <[email protected]> * resolved final comments on PR (variable renaming, refactor tests) Signed-off-by: Mwad22 <[email protected]> * reformatted after merge conflict Signed-off-by: Mwad22 <[email protected]> * Update CHANGELOG for Feast v0.11.0 Signed-off-by: Willem Pienaar <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Update charts README (#1659) Adding feast jupyter link to it. + Fix the helm 'feast-serving' name in aws/azure terraform. Signed-off-by: szalai1 <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Added Redis to list of online stores for local provider in providers reference doc. (#1668) Signed-off-by: Nel Swanepoel <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Grouped inferencing statements together in apply methods for easier readability (#1667) * grouped inferencing statements together Signed-off-by: David Y Liu <[email protected]> * update in testing Signed-off-by: David Y Liu <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Add RedshiftDataSource (#1669) * Add RedshiftDataSource Signed-off-by: Tsotne Tabidze <[email protected]> * Call parent __init__ first Signed-off-by: Tsotne Tabidze <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Provide the user with more options for setting the to_bigquery config (#1661) * Provide more options for to_bigquery config Signed-off-by: Cody Lin <[email protected]> * Fix default job_config when none; remove excessive testing Signed-off-by: Cody Lin <[email protected]> * Add param type and docstring Signed-off-by: Cody Lin <[email protected]> * add docstrings and typing Signed-off-by: Cody Lin <[email protected]> * Apply docstring suggestions from code review Co-authored-by: Willem Pienaar <[email protected]> Signed-off-by: Cody Lin <[email protected]> Co-authored-by: Willem Pienaar <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Add streaming sources to the FeatureView API (#1664) * Add a streaming source to the FeatureView API This diff only updates the API. It is currently up to the providers to actually use this information to spin up resources to consume events from the stream sources. Signed-off-by: Achal Shah <[email protected]> * remove stuff from rebase Signed-off-by: Achal Shah <[email protected]> * make format Signed-off-by: Achal Shah <[email protected]> * Update protos Signed-off-by: Achal Shah <[email protected]> * lint Signed-off-by: Achal Shah <[email protected]> * format Signed-off-by: Achal Shah <[email protected]> * CR Signed-off-by: Achal Shah <[email protected]> * fix test Signed-off-by: Achal Shah <[email protected]> * lint Signed-off-by: Achal Shah <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Add to_table() to RetrievalJob object (#1663) * Add notion of OfflineJob Signed-off-by: Matt Delacour <[email protected]> * Use RetrievalJob instead of creating a new OfflineJob object Signed-off-by: Matt Delacour <[email protected]> * Add to_table() in integration tests Signed-off-by: Matt Delacour <[email protected]> Co-authored-by: Tsotne Tabidze <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Rename to_table to to_arrow (#1671) Signed-off-by: Matt Delacour <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Cancel BigQuery job if timeout hits (#1672) * Cancel BigQuery job if timedout hits Signed-off-by: Matt Delacour <[email protected]> * Fix typo Signed-off-by: Matt Delacour <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Fix Feature References example (#1674) Fix Feature References example by passing `entity_rows` to `get_online_features()` Signed-off-by: Mwad22 <[email protected]> * Allow strings for online/offline store instead of dicts (#1673) Signed-off-by: Achal Shah <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Remove default list from the FeatureView constructor (#1679) Signed-off-by: Achal Shah <[email protected]> Signed-off-by: Mwad22 <[email protected]> * made changes requested by @tsotnet Signed-off-by: Mwad22 <[email protected]> * Fix unit tests that got broken by Pandas 1.3.0 release (#1683) Signed-off-by: Tsotne Tabidze <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Add support for DynamoDB and S3 registry (#1483) * Add support for DynamoDB and S3 registry Signed-off-by: lblokhin <[email protected]> * rcu and wcu as a parameter of dynamodb online store Signed-off-by: lblokhin <[email protected]> * fix linter Signed-off-by: lblokhin <[email protected]> * aws dependency to extras Signed-off-by: lblokhin <[email protected]> * FEAST_S3_ENDPOINT_URL Signed-off-by: lblokhin <[email protected]> * tests Signed-off-by: lblokhin <[email protected]> * fix signature, after merge Signed-off-by: lblokhin <[email protected]> * aws default region name configurable Signed-off-by: lblokhin <[email protected]> * add offlinestore config type to test Signed-off-by: lblokhin <[email protected]> * review changes Signed-off-by: lblokhin <[email protected]> * review requested changes Signed-off-by: lblokhin <[email protected]> * integration test for Dynamo Signed-off-by: lblokhin <[email protected]> * change the rest of table_name to table_instance (where table_name is actually an instance of DynamoDB Table object) Signed-off-by: lblokhin <[email protected]> * fix DynamoDBOnlineStore commit Signed-off-by: lblokhin <[email protected]> * move client to _initialize_dynamodb Signed-off-by: lblokhin <[email protected]> * rename document_id to entity_id and Row to entity_id Signed-off-by: lblokhin <[email protected]> * The default value is None Signed-off-by: lblokhin <[email protected]> * Remove Datastore from the docstring. Signed-off-by: lblokhin <[email protected]> * get rid of the return call from S3RegistryStore Signed-off-by: lblokhin <[email protected]> * merge two exceptions Signed-off-by: lblokhin <[email protected]> * For ci requirement Signed-off-by: lblokhin <[email protected]> * remove configuration from test Signed-off-by: lblokhin <[email protected]> * feast-integration-tests for tests Signed-off-by: lblokhin <[email protected]> * change test path Signed-off-by: lblokhin <[email protected]> * add fixture feature_store_with_s3_registry to test Signed-off-by: lblokhin <[email protected]> * region required Signed-off-by: lblokhin <[email protected]> * Address the rest of the comments Signed-off-by: Tsotne Tabidze <[email protected]> * Update to_table to to_arrow Signed-off-by: Tsotne Tabidze <[email protected]> Co-authored-by: Tsotne Tabidze <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Parallelize integration tests (#1684) * Parallelize integration tests Signed-off-by: Tsotne Tabidze <[email protected]> * Update the usage flag Signed-off-by: Tsotne Tabidze <[email protected]> Signed-off-by: Mwad22 <[email protected]> * BQ exception should be raised first before we check the timedout (#1675) Signed-off-by: Matt Delacour <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Update sdk/python/feast/infra/provider.py Co-authored-by: Willem Pienaar <[email protected]> Signed-off-by: Mwad22 <[email protected]> * Update sdk/python/feast/feature_store.py Co-authored-by: Willem Pienaar <[email protected]> Signed-off-by: Mwad22 <[email protected]> * made error logic/messages more descriptive Signed-off-by: Mwad22 <[email protected]> * made error logic/messages more descriptive. Signed-off-by: Mwad22 <[email protected]> * Simplified error messages Signed-off-by: Mwad22 <[email protected]> * ran formatter, issue in errors.py Signed-off-by: Mwad22 <[email protected]> * python linter issues resolved Signed-off-by: Mwad22 <[email protected]> * removed unnecessary default assignment in get_historical_features. default now set only in feature_store.py Signed-off-by: Mwad22 <[email protected]> * added error message assertion for feature name collisions, and other nitpick changes Signed-off-by: Mwad22 <[email protected]> Co-authored-by: David Y Liu <[email protected]> Co-authored-by: Tsotne Tabidze <[email protected]> Co-authored-by: Achal Shah <[email protected]> Co-authored-by: David Y Liu <[email protected]> Co-authored-by: Willem Pienaar <[email protected]> Co-authored-by: codyjlin <[email protected]> Co-authored-by: Matt Delacour <[email protected]> Co-authored-by: Willem Pienaar <[email protected]> Co-authored-by: Peter Szalai <[email protected]> Co-authored-by: Nel Swanepoel <[email protected]> Co-authored-by: Willem Pienaar <[email protected]> Co-authored-by: Greg Kuhlmann <[email protected]> Co-authored-by: Leonid <[email protected]>

mavysavydav requested review from achals, tsotnet, woop and a team as code owners June 13, 2021 00:03

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codyjlin mentioned this pull request Jun 14, 2021

Provide descriptive error on invalid table reference #1627

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mavysavydav requested a review from achals June 16, 2021 00:13

mavysavydav added 7 commits June 17, 2021 11:17

wip1

ed8d461

Signed-off-by: David Y Liu <[email protected]>

just need to do clean up

91ef76b

Signed-off-by: David Y Liu <[email protected]>

linted

0dab89c

Signed-off-by: David Y Liu <[email protected]>

improve test coverage

b24e571

Signed-off-by: David Y Liu <[email protected]>

changed placement of inference methods in repo_operation apply_total

bb3a08a

Signed-off-by: David Y Liu <[email protected]>

updated inference method name + changed to void return since it updat…

3053599

…es in place Signed-off-by: David Y Liu <[email protected]>

fixed integration test and added comments

d558b0b

Signed-off-by: David Y Liu <[email protected]>

Made DataSource event_timestamp_column optional

9a854bf

Signed-off-by: David Y Liu <[email protected]>

mavysavydav force-pushed the inferenceImprovementsAndRefactor branch from c72f013 to 9a854bf Compare June 18, 2021 20:05

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achals changed the title ~~Inferencing improvements and refactor (e.g. should happen at apply time)~~ Schema Inferencing improvements should happen at apply time Jun 18, 2021

achals changed the title ~~Schema Inferencing improvements should happen at apply time~~ Schema Inferencing should happen at apply time Jun 18, 2021

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feast-ci-bot merged commit c50a36e into feast-dev:master Jun 18, 2021

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Schema Inferencing should happen at apply time #1646

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Schema Inferencing should happen at apply time #1646

Schema Inferencing should happen at apply time #1646

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