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wolski authored Jun 29, 2024
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Expand Up @@ -210,23 +210,6 @@ To use `prolfqua` knowledge of the R regression model infrastructure is of advan



## Running R-scripts

Generate QC report from bat file.
First add `<prolfqua_path>/win` to your path variable. Then you can generate a QC report from a maxquant QC by running.


```
lfq_MQ_SampleSizeReport.bat .\data\1296877_QC.zip
```


```
Rscript ~/__checkouts/R/prolfqua/inst/run_scripts/lfq_MQ_SampleSizeReport.R --help
Rscript ~/__checkouts/R/prolfqua/inst/run_scripts/lfq_MQ_SampleSizeReport.R ~/Downloads/1330043.zip
```


# Related resources

- [proDA](https://www.bioconductor.org/packages/release/bioc/html/proDA.html)
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