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Swedish A.thaliana field adaptation - common gardens experiments

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depreciated.Rmd
depreciated.Rmd
 
 
manuscript.figures
manuscript.figures
 
 
scripts
scripts
 
 
01.CG.DLF.initial.Rmd
01.CG.DLF.initial.Rmd
 
 
24.haplotype.block.thin.Rmd
24.haplotype.block.thin.Rmd
 
 
27.fitness.BLUPS.Rmd
27.fitness.BLUPS.Rmd
 
 
28.BLUP.GWAS.Rmd
28.BLUP.GWAS.Rmd
 
 
29.BLUP.heatmap.by.K.Rmd
29.BLUP.heatmap.by.K.Rmd
 
 
30.robustness.Kmatrix.clusters.Rmd
30.robustness.Kmatrix.clusters.Rmd
 
 
31.fecundity.BLUPS.Rmd
31.fecundity.BLUPS.Rmd
 
 
32.ows.BLUPS.Rmd
32.ows.BLUPS.Rmd
 
 
33.sss.BLUPS.Rmd
33.sss.BLUPS.Rmd
 
 
34.slugs.K.groups.Rmd
34.slugs.K.groups.Rmd
 
 
38.fitness.BLUPs.with.Kgroups.Rmd
38.fitness.BLUPs.with.Kgroups.Rmd
 
 
41.gene.annot.in.windows.Rmd
41.gene.annot.in.windows.Rmd
 
 
46.allele.freq.differences.Kgroups.Rmd
46.allele.freq.differences.Kgroups.Rmd
 
 
47.fitnessGWAS.by.AFD.Rmd
47.fitnessGWAS.by.AFD.Rmd
 
 
48.AFD.genome.scan.subsets.Rmd
48.AFD.genome.scan.subsets.Rmd
 
 
48.AFD.genome.scan.subsets.analyses.Rmd
48.AFD.genome.scan.subsets.analyses.Rmd
 
 
48.AFD.genome.scan.subsets.functions.Rmd
48.AFD.genome.scan.subsets.functions.Rmd
 
 
49.allele.freqs.vs.beta.swedish.genomes.scan.Rmd
49.allele.freqs.vs.beta.swedish.genomes.scan.Rmd
 
 
50.compare.scan.nonscan.subsets.analyses.Rmd
50.compare.scan.nonscan.subsets.analyses.Rmd
 
 
50.compare.scan.nonscan.subsets.functions.R
50.compare.scan.nonscan.subsets.functions.R
 
 
50.compare.scan.nonscan.subsets.functions.Rmd
50.compare.scan.nonscan.subsets.functions.Rmd
 
 
51.cumulative.betas.Rmd
51.cumulative.betas.Rmd
 
 
52.examine.AFandAFD.distributions.Rmd
52.examine.AFandAFD.distributions.Rmd
 
 
52.rotate.AFandAFD.distributions.Rmd
52.rotate.AFandAFD.distributions.Rmd
 
 
53.rotate.AFandAFDdistributions.R
53.rotate.AFandAFDdistributions.R
 
 
53.rotate.AFandAFDdistributions.Rmd
53.rotate.AFandAFDdistributions.Rmd
 
 
53.rotate.fitness.north.R
53.rotate.fitness.north.R
 
 
53.rotate.fitness.north.submit.sh
53.rotate.fitness.north.submit.sh
 
 
53.rotate.fitness.south.R
53.rotate.fitness.south.R
 
 
53.rotate.fitness.south.submit.sh
53.rotate.fitness.south.submit.sh
 
 
53.rotate.fitness2.north.R
53.rotate.fitness2.north.R
 
 
53.rotate.fitness2.north.submit.sh
53.rotate.fitness2.north.submit.sh
 
 
53.rotate.fitness2.south.R
53.rotate.fitness2.south.R
 
 
53.rotate.fitness2.south.submit.sh
53.rotate.fitness2.south.submit.sh
 
 
53.rotate.gea.north.R
53.rotate.gea.north.R
 
 
53.rotate.gea.north.submit.sh
53.rotate.gea.north.submit.sh
 
 
53.rotate.gea.south.R
53.rotate.gea.south.R
 
 
53.rotate.gea.south.submit.sh
53.rotate.gea.south.submit.sh
 
 
53.rotate.scan.north.R
53.rotate.scan.north.R
 
 
53.rotate.scan.north.submit.sh
53.rotate.scan.north.submit.sh
 
 
53.rotate.scan.south.R
53.rotate.scan.south.R
 
 
53.rotate.scan.south.submit.sh
53.rotate.scan.south.submit.sh
 
 
54.parse.AFandAFD.rotations.Rmd
54.parse.AFandAFD.rotations.Rmd
 
 
55.genome.rotation.freq.beta.relationships.Rmd
55.genome.rotation.freq.beta.relationships.Rmd
 
 
99.geo.helper.fxns.R
99.geo.helper.fxns.R
 
 
F1.figure1.Rmd
F1.figure1.Rmd
 
 
F2.figure2.Rmd
F2.figure2.Rmd
 
 
F3.figure3.Rmd
F3.figure3.Rmd
 
 
F4.figure4.Rmd
F4.figure4.Rmd
 
 
F5.figure5.Rmd
F5.figure5.Rmd
 
 
F6.figure6.Rmd
F6.figure6.Rmd
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
common.gardens.Rproj
common.gardens.Rproj
 
 
main.Rmd
main.Rmd
 
 
main.pdf
main.pdf
 
 

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Swedish A.thaliana field adaptation - common gardens experiments

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