Expose all settings in ydata-profiling ProfileReport #14053
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| name: Build | |
| # Schedule runs to run twice a day | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - 'release-v**' | |
| pull_request: | |
| schedule: | |
| - cron: "0 13 * * *" # This schedule runs at 1pm UTC every day | |
| env: | |
| FLYTE_SDK_LOGGING_LEVEL: 10 # debug | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number }} | |
| cancel-in-progress: true | |
| jobs: | |
| detect-python-versions: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| python-versions: ${{ env.python_versions }} | |
| steps: | |
| - name: Set Python versions for run | |
| run: | | |
| if [[ ${{ github.event_name }} == "schedule" ]]; then | |
| echo "python_versions=[\"3.9\",\"3.10\",\"3.11\",\"3.12\"]" >> $GITHUB_ENV | |
| else | |
| echo "python_versions=[\"3.9\", \"3.12\"]" >> $GITHUB_ENV | |
| fi | |
| build: | |
| needs: | |
| - detect-python-versions | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Clear action cache" | |
| uses: ./.github/actions/clear-action-cache | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| # This path is specific to Ubuntu | |
| path: ~/.cache/pip | |
| # Look to see if there is a cache hit for the corresponding requirements files | |
| key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }} | |
| - name: Install dependencies | |
| run: | | |
| pip install uv | |
| make setup-global-uv | |
| uv pip uninstall --system pandas pyarrow | |
| uv pip freeze | |
| - name: Test with coverage | |
| run: | | |
| make unit_test_codecov | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| fail_ci_if_error: false | |
| files: coverage.xml | |
| build-with-extras: | |
| needs: | |
| - detect-python-versions | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Clear action cache" | |
| uses: ./.github/actions/clear-action-cache | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| # This path is specific to Ubuntu | |
| path: ~/.cache/pip | |
| # Look to see if there is a cache hit for the corresponding requirements files | |
| key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }} | |
| - name: Install dependencies | |
| run: | | |
| pip install uv | |
| make setup-global-uv | |
| uv pip uninstall --system pandas pyarrow | |
| uv pip freeze | |
| - name: Run extras unit tests with coverage | |
| # Skip this step if running on python 3.12 due to https://github.com/tensorflow/tensorflow/issues/62003 | |
| # and https://github.com/pytorch/pytorch/issues/110436 | |
| if: ${{ matrix.python-version != '3.12' }} | |
| run: | | |
| make unit_test_extras_codecov | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| fail_ci_if_error: false | |
| files: coverage.xml | |
| build-with-pandas: | |
| needs: | |
| - detect-python-versions | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}} | |
| pandas: ["pandas<2.0.0", "pandas>=2.0.0"] | |
| numpy: ["numpy<2.0.0", "numpy>=2.0.0"] | |
| exclude: | |
| - numpy: "numpy>=2.0.0" | |
| pandas: "pandas<2.0.0" | |
| - numpy: "numpy<2.0.0" | |
| pandas: "pandas>=2.0.0" | |
| - numpy: "numpy>=2.0.0" | |
| python-version: "3.8" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Clear action cache" | |
| uses: ./.github/actions/clear-action-cache | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| # This path is specific to Ubuntu | |
| path: ~/.cache/pip | |
| # Look to see if there is a cache hit for the corresponding requirements files | |
| key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }} | |
| - name: Install dependencies | |
| run: | | |
| pip install uv | |
| make setup-global-uv | |
| uv pip install --system --force-reinstall "${{ matrix.pandas }}" "${{ matrix.numpy }}" | |
| uv pip freeze | |
| - name: Test with coverage | |
| run: | | |
| make unit_test_codecov | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| fail_ci_if_error: false | |
| files: coverage.xml | |
| test-hypothesis: | |
| needs: | |
| - detect-python-versions | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| # This path is specific to Ubuntu | |
| path: ~/.cache/pip | |
| # Look to see if there is a cache hit for the corresponding requirements files | |
| key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }} | |
| - name: Install dependencies | |
| run: | | |
| pip install uv | |
| make setup-global-uv | |
| uv pip freeze | |
| - name: Test with coverage | |
| env: | |
| FLYTEKIT_HYPOTHESIS_PROFILE: ci | |
| run: | | |
| make unit_test_hypothesis | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| fail_ci_if_error: false | |
| files: coverage.xml | |
| test-serialization: | |
| needs: | |
| - detect-python-versions | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| # This path is specific to Ubuntu | |
| path: ~/.cache/pip | |
| # Look to see if there is a cache hit for the corresponding requirements files | |
| key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }} | |
| - name: Install dependencies | |
| run: | | |
| pip install uv | |
| make setup-global-uv | |
| uv pip freeze | |
| - name: Test with coverage | |
| run: | | |
| make test_serialization_codecov | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| fail_ci_if_error: false | |
| files: coverage.xml | |
| integration: | |
| needs: | |
| - detect-python-versions | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}} | |
| makefile-cmd: | |
| [integration_test_codecov, integration_test_lftransfers_codecov] | |
| steps: | |
| # As described in https://github.com/pypa/setuptools_scm/issues/414, SCM needs git history | |
| # and tags to work. | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: "Clear action cache" | |
| uses: ./.github/actions/clear-action-cache # sandbox has disk pressure, so we need to clear the cache to get more disk space. | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| # This path is specific to Ubuntu | |
| path: ~/.cache/pip | |
| # Look to see if there is a cache hit for the corresponding requirements files | |
| key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.in', 'requirements.in')) }} | |
| - name: Install dependencies | |
| run: | | |
| pip install uv | |
| make setup-global-uv | |
| uv pip freeze | |
| - name: Install FlyteCTL | |
| uses: unionai-oss/flytectl-setup-action@master | |
| - name: Setup Flyte Sandbox | |
| run: | | |
| flytectl demo start | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| with: | |
| driver-opts: | | |
| image=moby/buildkit:master | |
| network=host | |
| - name: Build and push to local registry | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: Dockerfile.dev | |
| build-args: | | |
| PYTHON_VERSION=${{ matrix.python-version }} | |
| PSEUDO_VERSION=1.999.0dev0 | |
| push: true | |
| tags: localhost:30000/flytekit:dev | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| - name: Integration Test with coverage | |
| env: | |
| FLYTEKIT_IMAGE: localhost:30000/flytekit:dev | |
| FLYTEKIT_CI: 1 | |
| PYTEST_OPTS: -n2 | |
| run: | | |
| make ${{ matrix.makefile-cmd }} | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| fail_ci_if_error: false | |
| build-plugins: | |
| needs: | |
| - build | |
| - detect-python-versions | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ${{fromJson(needs.detect-python-versions.outputs.python-versions)}} | |
| plugin-names: | |
| # Please maintain an alphabetical order in the following list | |
| - flytekit-airflow | |
| - flytekit-async-fsspec | |
| - flytekit-aws-athena | |
| - flytekit-aws-batch | |
| - flytekit-aws-sagemaker | |
| - flytekit-bigquery | |
| - flytekit-comet-ml | |
| - flytekit-dask | |
| - flytekit-data-fsspec | |
| - flytekit-dbt | |
| - flytekit-deck-standard | |
| # TODO: remove dolt plugin - https://github.com/flyteorg/flyte/issues/5350 | |
| # flytekit-dolt | |
| - flytekit-duckdb | |
| - flytekit-envd | |
| - flytekit-flyteinteractive | |
| - flytekit-greatexpectations | |
| - flytekit-hive | |
| - flytekit-huggingface | |
| - flytekit-identity-aware-proxy | |
| - flytekit-inference | |
| - flytekit-k8s-pod | |
| - flytekit-kf-mpi | |
| - flytekit-kf-pytorch | |
| - flytekit-kf-tensorflow | |
| - flytekit-mlflow | |
| - flytekit-mmcloud | |
| - flytekit-modin | |
| - flytekit-neptune | |
| - flytekit-onnx-pytorch | |
| - flytekit-onnx-scikitlearn | |
| # onnx-tensorflow needs a version of tensorflow that does not work with protobuf>4. | |
| # The issue is being tracked on the tensorflow side in https://github.com/tensorflow/tensorflow/issues/53234#issuecomment-1330111693 | |
| # flytekit-onnx-tensorflow | |
| - flytekit-omegaconf | |
| - flytekit-openai | |
| - flytekit-pandera | |
| - flytekit-papermill | |
| - flytekit-polars | |
| - flytekit-ray | |
| - flytekit-snowflake | |
| - flytekit-spark | |
| - flytekit-sqlalchemy | |
| - flytekit-vaex | |
| - flytekit-whylogs | |
| exclude: | |
| - python-version: 3.9 | |
| plugin-names: "flytekit-aws-sagemaker" | |
| # flytekit-modin depends on ray which does not have a 3.11 wheel yet. | |
| # Issue tracked in https://github.com/ray-project/ray/issues/27881 | |
| - python-version: 3.11 | |
| plugin-names: "flytekit-modin" | |
| - python-version: 3.11 | |
| plugin-names: "flytekit-ray" | |
| # Great-expectations does not support python 3.11 due to sqlachemy>=2.0.0 | |
| # not being supported yet: | |
| # https://github.com/great-expectations/great_expectations/issues/7020 | |
| - python-version: 3.11 | |
| plugin-names: "flytekit-greatexpectations" | |
| # onnxruntime does not support python 3.10 yet | |
| # https://github.com/microsoft/onnxruntime/issues/9782 | |
| - python-version: 3.11 | |
| plugin-names: "flytekit-onnx-pytorch" | |
| - python-version: 3.11 | |
| plugin-names: "flytekit-onnx-scikitlearn" | |
| - python-version: 3.11 | |
| plugin-names: "flytekit-onnx-tensorflow" | |
| # vaex currently doesn't support python 3.11 | |
| - python-version: 3.11 | |
| plugin-names: "flytekit-vaex" | |
| # whylogs does support python 3.11 dataclass restrictions | |
| # See: https://github.com/flyteorg/flytekit/actions/runs/4493746408/jobs/7905368664 | |
| - python-version: 3.11 | |
| plugin-names: "flytekit-whylogs" | |
| # apache-beam, one of flytekit-airflow dependencies, does not support python 3.12: https://github.com/apache/beam/issues/29149 | |
| - python-version: 3.12 | |
| plugin-names: "flytekit-airflow" | |
| # Tensorflow is a dependency of flytekit-mlflow tests and that is not supported yet: https://github.com/tensorflow/tensorflow/issues/62003 | |
| - python-version: 3.12 | |
| plugin-names: "flytekit-mlflow" | |
| # modin[ray] is a dependency needed to run the tests, unfortunately this is not supported in python 3.12 yet | |
| - python-version: 3.12 | |
| plugin-names: "flytekit-modin" | |
| # vaex currently doesn't support python 3.12 | |
| - python-version: 3.12 | |
| plugin-names: "flytekit-vaex" | |
| # Ray does not support python 3.12 yet: https://github.com/ray-project/ray/issues/40211 | |
| - python-version: 3.12 | |
| plugin-names: "flytekit-ray" | |
| # Segmentation fault on python 3.12: https://github.com/flyteorg/flyte/issues/5020 | |
| - python-version: 3.12 | |
| plugin-names: "flytekit-kf-pytorch" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Clear action cache" | |
| uses: ./.github/actions/clear-action-cache | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip | |
| uses: actions/cache@v3 | |
| with: | |
| # This path is specific to Ubuntu | |
| path: ~/.cache/pip | |
| # Look to see if there is a cache hit for the corresponding requirements files | |
| key: ${{ format('{0}-pip-{1}', runner.os, hashFiles('dev-requirements.txt', format('plugins/{0}/requirements.txt', matrix.plugin-names ))) }} | |
| - name: Install dependencies | |
| run: | | |
| pip install uv | |
| # TODO: double-check if checking out all tags solves the issue | |
| export SETUPTOOLS_SCM_PRETEND_VERSION="3.0.0" | |
| make setup-global-uv | |
| cd plugins/${{ matrix.plugin-names }} | |
| uv pip install --system . | |
| if [ -f dev-requirements.in ]; then uv pip install --system -r dev-requirements.in; fi | |
| # TODO: move to protobuf>=5. Github issue: https://github.com/flyteorg/flyte/issues/5448 | |
| uv pip install --system -U $GITHUB_WORKSPACE "protobuf<5" "git+https://github.com/flyteorg/flyte.git@master#subdirectory=flyteidl" | |
| # TODO: remove this when numpy v2 in onnx has been resolved | |
| if [[ ${{ matrix.plugin-names }} == *"onnx"* || ${{ matrix.plugin-names }} == "flytekit-sqlalchemy" || ${{ matrix.plugin-names }} == "flytekit-pandera" ]]; then | |
| uv pip install --system "numpy<2.0.0" | |
| fi | |
| uv pip freeze | |
| - name: Test with coverage | |
| run: | | |
| cd plugins/${{ matrix.plugin-names }} | |
| # onnx plugins does not support protobuf>4 yet (in fact it is tensorflow that | |
| # does not support that yet). More details in https://github.com/onnx/onnx/issues/4239. | |
| if [[ ${{ matrix.plugin-names }} == *"onnx"* || ${{ matrix.plugin-names }} == "flytekit-whylogs" || ${{ matrix.plugin-names }} == "flytekit-mlflow" ]]; then | |
| PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python coverage run -m pytest tests --cov=./ --cov-report=xml --cov-append | |
| else | |
| coverage run -m pytest tests --cov=./ --cov-report=xml --cov-append | |
| fi | |
| - name: Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| fail_ci_if_error: false | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Fetch the code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.12 | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/dev-requirements.in') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install uv | |
| make setup-global-uv | |
| uv pip freeze | |
| - name: Lint | |
| run: | | |
| make lint |