add cli command (close #12)

gnames · Feb 26, 2024 · 2191c75 · 2191c75
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,7 +5,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+Add [#12]: add cli command.
+Add [#11]: normalize DwCA and save into a file.
 Add [#10]: find how sci-name, hierarchy, synonyms are expressed in a DwCA file.
+Add [#7]: normalize synonyms.
+Add [#6]: normalize hierarhcies.
+Add [#5]: normalize scientific name.
 Add [#4]: convenience meta object.
 
 ## [v0.0.1] - 2024-02-12 Mon

diff --git a/config/config.go → pkg/config/config.go b/config/config.go → pkg/config/config.go
diff --git a/config/config_test.go → pkg/config/config_test.go b/config/config_test.go → pkg/config/config_test.go
diff --git a/core_output.go → pkg/core_output.go b/core_output.go → pkg/core_output.go
diff --git a/dc_taxon.go → pkg/dc_taxon.go b/dc_taxon.go → pkg/dc_taxon.go
diff --git a/dwca.go → pkg/dwca.go b/dwca.go → pkg/dwca.go
diff --git a/dwca_test.go → pkg/dwca_test.go b/dwca_test.go → pkg/dwca_test.go
diff --git a/ent/eml/eml.go → pkg/ent/eml/eml.go b/ent/eml/eml.go → pkg/ent/eml/eml.go
diff --git a/ent/eml/eml_test.go → pkg/ent/eml/eml_test.go b/ent/eml/eml_test.go → pkg/ent/eml/eml_test.go
diff --git a/ent/eml/err.go → pkg/ent/eml/err.go b/ent/eml/err.go → pkg/ent/eml/err.go
diff --git a/ent/eml/methods.go → pkg/ent/eml/methods.go b/ent/eml/methods.go → pkg/ent/eml/methods.go
diff --git a/ent/meta/data.go → pkg/ent/meta/data.go b/ent/meta/data.go → pkg/ent/meta/data.go
diff --git a/ent/meta/data_test.go → pkg/ent/meta/data_test.go b/ent/meta/data_test.go → pkg/ent/meta/data_test.go
diff --git a/ent/meta/err.go → pkg/ent/meta/err.go b/ent/meta/err.go → pkg/ent/meta/err.go
diff --git a/ent/meta/meta.go → pkg/ent/meta/meta.go b/ent/meta/meta.go → pkg/ent/meta/meta.go
diff --git a/ent/meta/meta_test.go → pkg/ent/meta/meta_test.go b/ent/meta/meta_test.go → pkg/ent/meta/meta_test.go
diff --git a/ent/meta/methods.go → pkg/ent/meta/methods.go b/ent/meta/methods.go → pkg/ent/meta/methods.go
diff --git a/ext_output.go → pkg/ext_output.go b/ext_output.go → pkg/ext_output.go
diff --git a/factory.go → pkg/factory.go b/factory.go → pkg/factory.go
diff --git a/hierarchy.go → pkg/hierarchy.go b/hierarchy.go → pkg/hierarchy.go
diff --git a/interface.go → pkg/interface.go b/interface.go → pkg/interface.go
diff --git a/meta_eml_output.go → pkg/meta_eml_output.go b/meta_eml_output.go → pkg/meta_eml_output.go
diff --git a/output_test.go → pkg/output_test.go b/output_test.go → pkg/output_test.go
diff --git a/testdata/data.tar → pkg/testdata/data.tar b/testdata/data.tar → pkg/testdata/data.tar
diff --git a/testdata/data.tar.bz2 → pkg/testdata/data.tar.bz2 b/testdata/data.tar.bz2 → pkg/testdata/data.tar.bz2
diff --git a/testdata/data.tar.gz → pkg/testdata/data.tar.gz b/testdata/data.tar.gz → pkg/testdata/data.tar.gz
diff --git a/testdata/data.tar.xz → pkg/testdata/data.tar.xz b/testdata/data.tar.xz → pkg/testdata/data.tar.xz
diff --git a/testdata/data.zip → pkg/testdata/data.zip b/testdata/data.zip → pkg/testdata/data.zip
diff --git a/testdata/diagn/hierarchy/flat.tar.gz → pkg/testdata/diagn/hierarchy/flat.tar.gz b/testdata/diagn/hierarchy/flat.tar.gz → pkg/testdata/diagn/hierarchy/flat.tar.gz
diff --git a/testdata/diagn/hierarchy/tmp/eml.xml → pkg/testdata/diagn/hierarchy/tmp/eml.xml b/testdata/diagn/hierarchy/tmp/eml.xml → pkg/testdata/diagn/hierarchy/tmp/eml.xml
diff --git a/testdata/diagn/hierarchy/tmp/flat.tar.gz → pkg/testdata/diagn/hierarchy/tmp/flat.tar.gz b/testdata/diagn/hierarchy/tmp/flat.tar.gz → pkg/testdata/diagn/hierarchy/tmp/flat.tar.gz
diff --git a/testdata/diagn/hierarchy/tmp/meta.xml → pkg/testdata/diagn/hierarchy/tmp/meta.xml b/testdata/diagn/hierarchy/tmp/meta.xml → pkg/testdata/diagn/hierarchy/tmp/meta.xml
diff --git a/testdata/diagn/hierarchy/tmp/taxon.txt → pkg/testdata/diagn/hierarchy/tmp/taxon.txt b/testdata/diagn/hierarchy/tmp/taxon.txt → pkg/testdata/diagn/hierarchy/tmp/taxon.txt
diff --git a/testdata/diagn/hierarchy/tree.tar.gz → pkg/testdata/diagn/hierarchy/tree.tar.gz b/testdata/diagn/hierarchy/tree.tar.gz → pkg/testdata/diagn/hierarchy/tree.tar.gz
diff --git a/testdata/diagn/hierarchy/tree_depr.tar.gz → ...testdata/diagn/hierarchy/tree_depr.tar.gz b/testdata/diagn/hierarchy/tree_depr.tar.gz → ...testdata/diagn/hierarchy/tree_depr.tar.gz
diff --git a/testdata/diagn/hierarchy/unknown.tar.gz → pkg/testdata/diagn/hierarchy/unknown.tar.gz b/testdata/diagn/hierarchy/unknown.tar.gz → pkg/testdata/diagn/hierarchy/unknown.tar.gz
diff --git a/testdata/diagn/scinames/canonical.tar.gz → pkg/testdata/diagn/scinames/canonical.tar.gz b/testdata/diagn/scinames/canonical.tar.gz → pkg/testdata/diagn/scinames/canonical.tar.gz
diff --git a/testdata/diagn/scinames/composite.tar.gz → pkg/testdata/diagn/scinames/composite.tar.gz b/testdata/diagn/scinames/composite.tar.gz → pkg/testdata/diagn/scinames/composite.tar.gz
diff --git a/testdata/diagn/scinames/full-auth-dup.tar.gz → ...tdata/diagn/scinames/full-auth-dup.tar.gz b/testdata/diagn/scinames/full-auth-dup.tar.gz → ...tdata/diagn/scinames/full-auth-dup.tar.gz
diff --git a/testdata/diagn/scinames/unknown.tar.gz → pkg/testdata/diagn/scinames/unknown.tar.gz b/testdata/diagn/scinames/unknown.tar.gz → pkg/testdata/diagn/scinames/unknown.tar.gz
diff --git a/testdata/diagn/synonyms/hierarchy.tar.gz → pkg/testdata/diagn/synonyms/hierarchy.tar.gz b/testdata/diagn/synonyms/hierarchy.tar.gz → pkg/testdata/diagn/synonyms/hierarchy.tar.gz
diff --git a/...iagn/synonyms/hierarchy_deprecated.tar.gz → ...iagn/synonyms/hierarchy_deprecated.tar.gz b/...iagn/synonyms/hierarchy_deprecated.tar.gz → ...iagn/synonyms/hierarchy_deprecated.tar.gz
diff --git a/...ta/diagn/synonyms/in_core_accepted.tar.gz → ...ta/diagn/synonyms/in_core_accepted.tar.gz b/...ta/diagn/synonyms/in_core_accepted.tar.gz → ...ta/diagn/synonyms/in_core_accepted.tar.gz
diff --git a/testdata/diagn/synonyms/in_extension.tar.gz → ...stdata/diagn/synonyms/in_extension.tar.gz b/testdata/diagn/synonyms/in_extension.tar.gz → ...stdata/diagn/synonyms/in_extension.tar.gz
diff --git a/testdata/diagn/synonyms/unknown.tar.gz → pkg/testdata/diagn/synonyms/unknown.tar.gz b/testdata/diagn/synonyms/unknown.tar.gz → pkg/testdata/diagn/synonyms/unknown.tar.gz
diff --git a/testdata/eml.xml → pkg/testdata/eml.xml b/testdata/eml.xml → pkg/testdata/eml.xml
diff --git a/testdata/eml/medium.xml → pkg/testdata/eml/medium.xml b/testdata/eml/medium.xml → pkg/testdata/eml/medium.xml
diff --git a/testdata/eml/small.xml → pkg/testdata/eml/small.xml b/testdata/eml/small.xml → pkg/testdata/eml/small.xml
diff --git a/testdata/fake → pkg/testdata/fake b/testdata/fake → pkg/testdata/fake
diff --git a/testdata/fake.tar → pkg/testdata/fake.tar b/testdata/fake.tar → pkg/testdata/fake.tar
diff --git a/testdata/fake.tar.bz2 → pkg/testdata/fake.tar.bz2 b/testdata/fake.tar.bz2 → pkg/testdata/fake.tar.bz2
diff --git a/testdata/fake.tar.gz → pkg/testdata/fake.tar.gz b/testdata/fake.tar.gz → pkg/testdata/fake.tar.gz
diff --git a/testdata/fake.tar.xz → pkg/testdata/fake.tar.xz b/testdata/fake.tar.xz → pkg/testdata/fake.tar.xz
diff --git a/testdata/fake.zip → pkg/testdata/fake.zip b/testdata/fake.zip → pkg/testdata/fake.zip
diff --git a/testdata/meta/col.xml → pkg/testdata/meta/col.xml b/testdata/meta/col.xml → pkg/testdata/meta/col.xml
diff --git a/testdata/meta_absent.tar.gz → pkg/testdata/meta_absent.tar.gz b/testdata/meta_absent.tar.gz → pkg/testdata/meta_absent.tar.gz
diff --git a/testdata/meta_dupl.tar.gz → pkg/testdata/meta_dupl.tar.gz b/testdata/meta_dupl.tar.gz → pkg/testdata/meta_dupl.tar.gz
diff --git a/testdata/myriatrix.tar.gz → pkg/testdata/myriatrix.tar.gz b/testdata/myriatrix.tar.gz → pkg/testdata/myriatrix.tar.gz
diff --git a/testdata/unknown → pkg/testdata/unknown b/testdata/unknown → pkg/testdata/unknown