minor bugfix #654
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python [3.7,3.8,3.9,3.10,3.11] Linux | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| env: | |
| BEZIER_NO_EXTENSION: true | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.7, 3.8, 3.9, '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest pytest-cov pytest-xdist | |
| # if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Install package | |
| run: | | |
| pip install --upgrade pip | |
| pip install --upgrade setuptools | |
| pip install -e . | |
| pip freeze | |
| #- name: Lint with flake8 | |
| # run: | | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| #- name: Test with pytest and coverage MacOs one single thread and ignoring calls to scripts (WIP) | |
| # if: runner.os == 'macOs' | |
| # run: | | |
| # pytest -vs --cov=./ --cov-report=xml --disable-warnings --ignore-glob="test_scripts.py" | |
| # if: runner.os == 'macOs' | |
| - name: Test with pytest and coverage Linux 8 threads | |
| run: | | |
| echo -e '[run]\nomit = *dihedrals.py,*contact_matrix.py' > .coveragerc | |
| pytest -n 8 -vs --cov=./ --cov-report=xml --disable-warnings --cov-config=.coveragerc | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| #directory: ./coverage/reports/ | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| #path_to_write_report: ./coverage/codecov_report.gz | |