Version 0.3.5

Changelog

1c596e4 Add type switch to get record uniqness - #27

Version 0.3.4

Changelog

• Modify index update functions to work with annotation files without elements - fix #25
• Remove gene_type tag break in GTF reader
• Add IsQCFail method to SAM record
• Update process tests
• Add protocol to general statistics - close #24

Version 0.3.3

Changelog

• Fix wrong feature merging and interleaving with unsorted annotation - close #23
• Add check for the number of chromosomes found in the annotation
• Switch to Go Modules - close #22

Version 0.3.2

Changelog

• Add version field in root command and remove version.go
• Update cobra and pflag dependencies
• Set input flag as required to avoid panic if running with no flags - close #19
• Add installation instructions in README.md

Version 0.3.1

Changelog

• Add check for int8 NH tag in general stats - fix #18

Version 0.3.0

Changelog

• Add RNA-seq stats from IHEC - close #17
• Add type method to Stats interface and update implementation - close #15
• Add method to stats.Map to output JSON - close #16
• Add tags to feature struct and GTF parsing function - close #14
• Add IHEC stats - close #10 #13
• Go back to normal map for annotation indices and use channel for goroutines synchronization - close #11
• Speed up updateIndex using OMT bulk-loading when creating the tree - #9
• Set runtime.NumCPU() as default number of cpus in bamstats command - close #12
• Improve annotation index generation using Rtree bulk load - close #9
• Add annotation scanner and reader to support GTF and BED format - close #8
• Fix CoverageStats collect method to skip missing chromosomes in the index - fixes #7
• Add workers and caller function for using BAM file index - resolves #4
• Use cli parameter to control number of cpus used for creating the region index - resolves #2
• Use goroutines when inserting points into the region index - closes #2
• Add support for compressed annotation file - closes #1

v0.2.0

Version 0.2.0

v0.1.1

Version 0.1.1

v0.1.0

First version