#36 Edit config to run on all samples instead of a test run

h3abionet · Dec 5, 2021 · 13b7c92 · 13b7c92
1 parent d0e29bd
commit 13b7c92
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/filter-config.conf b/filter-config.conf
@@ -9,7 +9,7 @@ params {
     genome2 = "./GRCh38.p0/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna"
     genome3 = "./CHM13.v1.1_GRCh38.p13.chrY/CHM13.v1.1_GRCh38.p13.chrY.fna"
     krakendb = "/home/groups/h3abionet/RefGraph/data/kraken2/pluspf_20200919"
-    samplePath = "./results/assembly/Final-Assembly/masurca/test2/*.final.fasta"
+    samplePath = "./results/assembly/Final-Assembly/masurca/*.final.fasta"
     taxdbPath = "./GRCh38/taxdb/taxdb.bt?"
     myQueue = "normal"
     skipcdhit = "false"