Differential Gene Expression Workshop Lessons from HCBC (first release)

First release of the differential gene expression analysis for bulk RNA-seq data training materials from the Harvard Chan Bioinformatics Core (https://bioinformatics.sph.harvard.edu/training). The count data are obtained by running Salmon on the bulk RNA-seq dataset from Kenny PJ et al. Cell Reports 2014 (DOI: 10.1016/j.celrep.2014.10.054).

These training materials utilize many R packages with a focus on the following packages:

• DESeq2
• clusterProfiler
• AnnotationHub