Merge branch 'dev' into enh/h5_file_setup

.github/workflows/check_external_links.yml

@@ -3,6 +3,7 @@ on:
   pull_request:
   schedule:
     - cron: '0 5 * * *'  # once per day at midnight ET
+  workflow_dispatch:
 
 jobs:
   check-external-links:

.github/workflows/run_all_tests.yml

@@ -5,6 +5,7 @@ on:
   push:
     tags:  # run only on new tags that follow semver
       - '/^[0-9]+(\.[0-9]+)?(\.[0-9]+)?$/'
+  workflow_dispatch:
 
 jobs:
   run-all-tests:

.github/workflows/run_coverage.yml

@@ -7,6 +7,7 @@ on:
       - 'latest'
       - 'latest-tmp'
   pull_request:
+  workflow_dispatch:
 
 jobs:
   run-coverage:

.github/workflows/run_pynwb_tests.yml

@@ -3,6 +3,7 @@ on:
   pull_request:
   schedule:
     - cron: '0 5 * * *'  # once per day at midnight ET
+  workflow_dispatch:
 
 jobs:
   run-tests:
@@ -32,9 +33,10 @@ jobs:
           git clone https://github.com/NeurodataWithoutBorders/pynwb.git --recurse-submodules
           cd pynwb
           python -m pip install -r requirements-dev.txt -r requirements.txt
-          python -m pip install .  # this will install a particular version of hdmf instead of the current one
+          # must install in editable mode for coverage to find sources
+          python -m pip install -e .  # this will install a pinned version of hdmf instead of the current one
           cd ..
-          python -m pip uninstall -y hdmf
+          python -m pip uninstall -y hdmf  # uninstall the pinned version of hdmf
           python -m pip install .  # reinstall current branch of hdmf
           python -m pip list
 

CHANGELOG.md

@@ -1,9 +1,15 @@
 # HDMF Changelog
 
-## HDMF 3.3.3 (Upcoming)
+## HDMF 3.4.0 (upcoming)
+
+### Minor improvements
+- Allow manual triggering of some GitHub Actions. @rly ([#744](https://github.com/hdmf-dev/hdmf/pull/744))
 - Relax input validation of `HDF5IO` to allow for s3fs support. Existing arguments of `HDF5IO` are modified as follows: i) `mode` was given a default value of "r", ii) `path` was given a default value of `None`, and iii) `file` can now accept an `S3File` type argument. @bendichter ([#746](https://github.com/hdmf-dev/hdmf/pull/746))
 - Added ability to create and get back handle to empty HDF5 dataset. @ajtritt (#747)
 
+### Bug fixes
+- Fixed PyNWB dev CI. @rly ([#749](https://github.com/hdmf-dev/hdmf/pull/749))
+
 ## HDMF 3.3.2 (June 27, 2022)
 
 ### Bug fixes