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Remove daysback option
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Anonymization should happen on the BIDS level.

Closes mne-toolsGH-159.
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hoechenberger committed Sep 8, 2020
1 parent 7e82fae commit 8df7274
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Showing 6 changed files with 7 additions and 16 deletions.
4 changes: 2 additions & 2 deletions .circleci/config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -95,9 +95,9 @@ jobs:
# Run tests
- run:
name: test ds000246
name: test ds003129
command: |
export DS=ds000246
export DS=ds003129
python tests/run_tests.py ${DS}
mkdir ~/reports/${DS}
cp ~/mne_data/${DS}/derivatives/mne-study-template/*/**/*_report.html ~/reports/${DS}/
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3 changes: 0 additions & 3 deletions 01-import_and_maxfilter.py
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Expand Up @@ -206,9 +206,6 @@ def load_data(bids_path):
raw = read_raw_bids(bids_path=bids_path,
extra_params=extra_params)

if config.daysback is not None:
raw.anonymize(daysback=config.daysback)

if subject != 'emptyroom':
# Crop the data.
if config.crop is not None:
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6 changes: 0 additions & 6 deletions config.py
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Expand Up @@ -53,12 +53,6 @@

subjects_dir = None

# ``daysback`` : int
# If not None apply a time shift to dates to adjust for limitateions
# of fif files

daysback = None

# ``interactive`` : boolean
# If True, the scripts will provide some interactive elements, such as
# figures. If running the scripts from a notebook or Spyder,
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
study_name = 'ds000246'
study_name = 'ds003129'
runs = ['01']
l_freq = .3
h_freq = 100.
Expand All @@ -9,4 +9,3 @@
conditions = ['standard', 'deviant', 'button']
contrasts = [('deviant', 'standard')]
decode = True
daysback = -365 * 110
5 changes: 3 additions & 2 deletions tests/download_test_data.py
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Expand Up @@ -16,7 +16,8 @@ def _provide_testing_data(dataset=None):
'https://github.com/sappelhoff/eeg_matchingpennies'),
# Anonymized "somato" dataset.
'ds003104': 'https://github.com/OpenNeuroDatasets/ds003104',
'ds000246': 'https://github.com/OpenNeuroDatasets/ds000246',
# Re-anonymized "ds000246" dataset.
'ds003129': 'https://github.com/OpenNeuroDatasets/ds003129',
'ds000248': 'https://github.com/OpenNeuroDatasets/ds000248',
'ds000117': 'https://github.com/OpenNeuroDatasets/ds000117',
'ds001810': 'https://github.com/OpenNeuroDatasets/ds001810',
Expand All @@ -34,7 +35,7 @@ def _provide_get_dict(dataset=None):
'eeg_matchingpennies': ['sub-05'],
'ds003104': ['sub-01',
'derivatives/freesurfer/subjects'],
'ds000246': ['sub-0001/meg/sub-0001_task-AEF_run-01_meg.ds',
'ds003129': ['sub-0001/meg/sub-0001_task-AEF_run-01_meg.ds',
'sub-0001/meg/sub-0001_task-AEF_run-01_meg.json',
'sub-0001/meg/sub-0001_task-AEF_run-01_channels.tsv'],
'ds000248': ['sub-01', 'sub-emptyroom',
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2 changes: 1 addition & 1 deletion tests/run_tests.py
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Expand Up @@ -64,7 +64,7 @@ def report():
DATA_DIR = op.join(op.expanduser('~'), 'mne_data')

TEST_SUITE = {
'ds000246': ('config_ds000246', sensor, report),
'ds003129': ('config_ds003129', sensor, report),
'ds000248': ('config_ds000248', sensor, source, report),
'ds001810': ('config_ds001810', sensor, report),
'eeg_matchingpennies': ('config_eeg_matchingpennies', sensor, report),
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