You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello, Prof Huang! I'm sorry to disturb you. I have a question to ask you. I have made some errors while installing diceseq, I think I should be installed successfully, but when running the code there is the following error. I'm not sure if it is my python environment or something else, here is my installation method:
conda create -n dicePy2 python=2.7 numpy==1.15.4 scipy==1.1.0 matplotlib==2.2.3 pysam==0.15.2
source activate dicePy2
and false content:
dice-count -a dice_count.gtf -s SRR5582776sorted.bam -o SRR5582776dice.txt --junction
Welcome to dice-count!
loading annotation file... Done.
Traceback (most recent call last):
File "/home/MK/anaconda3/bin/dice-count", line 8, in
sys.exit(main())
File "/home/MK/anaconda3/lib/python3.7/site-packages/diceseq/dice_count.py", line 132, in main
_map_num = np.loadtxt(pysam.idxstats(sam_file), "str")[:,2]
File "/home/MK/anaconda3/lib/python3.7/site-packages/numpy/lib/npyio.py", line 926, in loadtxt
fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
File "/home/MK/anaconda3/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 262, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/home/MK/anaconda3/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 618, in open
raise IOError("%s not found." % path)
OSError: I 230218 4139798 0
II 813184 16449284 0
III 316620 3758010 0
IV 1531933 19246328 0
V 576874 15693472 0
VI 270161 2536644 0
VII 1090940 18417732 0
VIII 562643 8431090 0
IX 439888 3765040 0
X 745751 10401514 0
XI 666816 8530514 0
XII 1078177 30091252 0
XIII 924431 12279986 0
XIV 784333 8578248 0
XV 1091291 15079578 0
XVI 948066 14969088 0
Mito 85779 928264 0
0 0 0
not found.
The text was updated successfully, but these errors were encountered:
Hello, Prof Huang! I'm sorry to disturb you. I have a question to ask you. I have made some errors while installing diceseq, I think I should be installed successfully, but when running the code there is the following error. I'm not sure if it is my python environment or something else, here is my installation method:
conda create -n dicePy2 python=2.7 numpy==1.15.4 scipy==1.1.0 matplotlib==2.2.3 pysam==0.15.2
source activate dicePy2
and false content:
dice-count -a dice_count.gtf -s SRR5582776sorted.bam -o SRR5582776dice.txt --junction
Welcome to dice-count!
loading annotation file... Done.
Traceback (most recent call last):
File "/home/MK/anaconda3/bin/dice-count", line 8, in
sys.exit(main())
File "/home/MK/anaconda3/lib/python3.7/site-packages/diceseq/dice_count.py", line 132, in main
_map_num = np.loadtxt(pysam.idxstats(sam_file), "str")[:,2]
File "/home/MK/anaconda3/lib/python3.7/site-packages/numpy/lib/npyio.py", line 926, in loadtxt
fh = np.lib._datasource.open(fname, 'rt', encoding=encoding)
File "/home/MK/anaconda3/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 262, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/home/MK/anaconda3/lib/python3.7/site-packages/numpy/lib/_datasource.py", line 618, in open
raise IOError("%s not found." % path)
OSError: I 230218 4139798 0
II 813184 16449284 0
III 316620 3758010 0
IV 1531933 19246328 0
V 576874 15693472 0
VI 270161 2536644 0
VII 1090940 18417732 0
VIII 562643 8431090 0
IX 439888 3765040 0
X 745751 10401514 0
XI 666816 8530514 0
XII 1078177 30091252 0
XIII 924431 12279986 0
XIV 784333 8578248 0
XV 1091291 15079578 0
XVI 948066 14969088 0
Mito 85779 928264 0
not found.
The text was updated successfully, but these errors were encountered: