s3-upload-wf.0.1.2

Switch to new s3 upload tool with older aws-cli client that works with Collab ceph bucket

payload-gen-and-s3-submit-wf.0.2.1

Merge pull request #19 from icgc-argo/dna-seq-alignment.0.2.9

update tool/sub-wf version to address recent s3 upload issues

dna-seq-alignment.0.2.9-pre

pickup seq-data-to-lane-bam.0.1.5.0

dna-seq-alignment.0.2.9

• updated related tools to address s3 upload issues
• updated new version of payload gen
• updated new version of seq-data-to-lane-bam (not to rename input BAM)

dna-seq-alignment.0.2.8

added cleanup step

s3-upload-wf.0.1.1

Merge pull request #15 from icgc-argo/s3-upload-wf.0.1.1

add secondaryFiles for vcf files

payload-gen-and-s3-submit-wf.0.2.0

Merge pull request #12 from icgc-argo/dna-seq-alignment.0.2.5

update alignment wf using payload-gen-and-s3-submit subworkflow, upda…

0.2.4

• updated to new version of a few tools to support new field names in metadata schema

0.2.3.1

• added a tumour/normal pair of BAMs for testing, after alignment the pair can be used for variant calling
• no change affects the alignment workflow itself

0.2.3

Updated some tool URLs to point the new utility tools repo