Releases: icgc-argo-workflows/dna-seq-processing-wfs
Releases · icgc-argo-workflows/dna-seq-processing-wfs
1.9.2
What's Changed
- update song/score modules version
- add defaults to song/score containers and versions
Full Changelog: 1.9.1...1.9.2
dna-seq-alignment.v1.9.2
- Release
dna-seq-alignment.v1.9.2
(8e0ee44) - Package
dna-seq-alignment.v1.9.2.tar.gz
(sha256:dc096cad08204529cefe4782d761d34ac47de7bd0f317cab952a4ba79e120a8c
) - Package URI
github.com/icgc-argo-workflows/dna-seq-processing-wfs/[email protected]
- Run the package:
nextflow run icgc-argo-workflows/dna-seq-processing-wfs/dna-seq-alignment/main.nf -r dna-seq-alignment.v1.9.2 -params-file <params-json-file>
1.9.1
What's Changed
- Update to use [email protected] and [email protected] with song/score containers switching to
ghcr.io
and latest versions (score-client:5.8.1
& song-client:5.0.2
)
dna-seq-alignment.v1.9.1
- Release
dna-seq-alignment.v1.9.1
(5677186) - Package
dna-seq-alignment.v1.9.1.tar.gz
(sha256:58ae593867df08ce05eef6d7e10d5f4e6a9c9db8744b4ee3efc761ed3027259f
) - Package URI
github.com/icgc-argo-workflows/dna-seq-processing-wfs/[email protected]
- Run the package:
nextflow run icgc-argo-workflows/dna-seq-processing-wfs/dna-seq-alignment/main.nf -r dna-seq-alignment.v1.9.1 -params-file <params-json-file>
1.9.0
- update the workflow to use package:
bwa-mem-aligner.v0.2.0
andbam-merge-sort-markdup.v0.2.0
, which have fixes for the usage oftemp_dir
to resolve abnormal resume issue
dna-seq-alignment.v1.9.0
- Release
dna-seq-alignment.v1.9.0
(c08bf11) - Package
dna-seq-alignment.v1.9.0.tar.gz
(sha256:20a4c189997c8e93320f19f129571ed8d7d48b96ac24717edd247048c4168787
)
1.8.1
- updated to
[email protected]
, which is needed by ARGO SV working group to run WGS alignment job on HPC environment
Note:
- compatible argo-metadata-schema versions: 0.4.0, 0.5.0
- requires Nextflow 20.07.1 or higher
dna-seq-alignment.v1.8.1
- Release
dna-seq-alignment.v1.8.1
(f82a967) - Package
dna-seq-alignment.v1.8.1.tar.gz
(sha256:c6a0c79a86849b1a5a79db7585417cf1d410d2e18f89528c9e6f964c7185c49a
)
1.8.0
- updated to
[email protected]
and[email protected]
WFPM packages with support for newdata_subtypes
and adjusteddataType
- updated to
[email protected]
and[email protected]
Note:
- compatible argo-metadata-schema versions: 0.4.0, 0.5.0
- requires Nextflow 20.07.1 or higher
dna-seq-alignment.v1.8.0
- Release
dna-seq-alignment.v1.8.0
(d2fb7af) - Package
dna-seq-alignment.v1.8.0.tar.gz
(sha256:b3f1a76d5c037efb7ac061c7b051ca16b5364e51567de5539195406e86fdacdd
)