renamed function to avoid redefinition problems #2596
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Pytest | |
| on: | |
| push: | |
| paths-ignore: | |
| - '**/*.md' | |
| pull_request: | |
| paths-ignore: | |
| - '**/*.md' | |
| merge_group: | |
| env: | |
| SETUP_XVFB: True # avoid issues if mpl tries to open a GUI window | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| # the whole CI pipeline will be skipped if [ci skip] is in the commit msg | |
| if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| timeout-minutes: 60 | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10"] | |
| # env: | |
| # OMP_NUM_THREADS: 1 | |
| # MKL_NUM_THREADS: 1 | |
| # OPENBLAS_NUM_THREADS: 1 | |
| # NUMEXPR_NUM_THREADS: 1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get -y install libbz2-dev | |
| python -m pip install --upgrade pip | |
| pip install wheel pytest pytest-cov coveralls | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| # TODO: the section below can be removed if the compile step is fixed otherwise | |
| - name: Reinstall fitsio to ensure the numpy version during compilation matches the one at runtime | |
| run: | | |
| pip uninstall fitsio -y | |
| pip cache purge | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Install picca | |
| run: pip install -e . | |
| - name: Test with pytest | |
| timeout-minutes: 30 | |
| run: | | |
| pytest --capture=tee-sys --cov --cov-report xml --cov-config=.coveragerc . | |
| # allow connecting to the github action run via ssh if [ci debug] has been in the commit msg | |
| - name: Debug with tmate | |
| if: ${{ always() && contains(github.event.head_commit.message, '[ci debug]') }} | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: true | |
| # the following bit will save results tests as an artifact if [ci save] has been in the commit msg | |
| - name: Archive test results | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@v1 | |
| with: | |
| name: test-results_v${{ matrix.python-version }} | |
| path: /tmp/last_run_picca_test | |
| - name: Archive test results delta_extraction | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@v1 | |
| with: | |
| name: test-results-de_v${{ matrix.python-version }} | |
| path: /home/runner/work/picca/picca/py/picca/tests/delta_extraction/results | |
| - name: Coveralls | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }} | |
| run: coveralls | |
| # flake8: | |
| # runs-on: ubuntu-latest | |
| # if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| # steps: | |
| # - name: Lint with flake8 | |
| # run: | | |
| # pip install flake8 | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| # codestyle: | |
| # runs-on: ubuntu-latest | |
| # if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Python codestyle check | |
| # uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: 3.8 | |
| # - name: Install base dependencies | |
| # run: | | |
| # python -m pip install --upgrade pip | |
| # python -m pip install pycodestyle | |
| # - name: Check for runtime errors using pycodestyle | |
| # run: | | |
| # pycodestyle pypeit --count --select=E9 |