Update the nexus module #2304
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| name: Test | |
| on: | |
| pull_request: | |
| branches: [ main , "migrate**"] | |
| schedule: | |
| # 05:00 UTC = 06:00 CET = 07:00 CEST | |
| - cron: "0 5 * * *" | |
| # Cancel previous runs that have not completed | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| warm-lfs-cache: | |
| strategy: | |
| matrix: | |
| os: [ macos-13, ubuntu-latest, windows-latest ] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: nschloe/action-cached-lfs-checkout@v1 | |
| pytest: | |
| needs: warm-lfs-cache | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-13 | |
| - ubuntu-latest | |
| - windows-latest | |
| upstream: | |
| # In each group: | |
| # - Versions of ixmp and message_ix to test. | |
| # - Latest supported Python version for those or other dependencies. | |
| # - Extra dependencies, in particular fixed/maximum versions to resolve conficts. | |
| # - dask[dataframe] >= 2024.3.0 requires dask-expr and in turn pandas >= 2.0. | |
| # https://github.com/iiasa/message-ix-models/pull/156#issuecomment-2020152360 | |
| # - genno: upstream versions < 3.8.0 import genno.computations, removed in 1.25.0. | |
| # https://github.com/iiasa/message-ix-models/pull/156 | |
| # - pytest: upstream versions < 3.9.0 use a hook argument removed in pytest 8.1.0. | |
| # https://github.com/iiasa/message-ix-models/pull/155 | |
| # | |
| # Minimum version given in pyproject.toml | |
| - version: v3.4.0 | |
| python-version: "3.11" | |
| extra-deps: '"dask < 2024.3.0" "genno < 1.25" "pandas < 2.0" "pytest == 8.0.0"' # | |
| - version: v3.5.0 | |
| python-version: "3.11" | |
| extra-deps: '"dask < 2024.3.0" "genno < 1.25" "pandas < 2.0" "pytest == 8.0.0"' # | |
| - version: v3.6.0 | |
| python-version: "3.11" | |
| extra-deps: '"dask < 2024.3.0" "genno < 1.25" "pandas < 2.0" "pytest == 8.0.0"' # | |
| - version: v3.7.0 | |
| python-version: "3.11" | |
| extra-deps: 'dask[dataframe] "genno < 1.25" "pytest == 8.0.0"' # | |
| # Latest released version | |
| - version: v3.8.0 | |
| python-version: "3.12" | |
| extra-deps: 'dask[dataframe] "pytest == 8.0.0"' # | |
| # Development version | |
| - version: main | |
| python-version: "3.12" | |
| extra-deps: 'dask[dataframe]' # | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }}-py${{ matrix.upstream.python-version }}-upstream-${{ matrix.upstream.version }} | |
| steps: | |
| - name: Cache test data | |
| uses: actions/cache@v4 | |
| with: | |
| path: message-local-data | |
| key: ${{ matrix.os }} | |
| - name: Check out message-ix-models | |
| uses: nschloe/action-cached-lfs-checkout@v1 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.upstream.python-version }} | |
| cache: pip | |
| cache-dependency-path: "**/pyproject.toml" | |
| - uses: iiasa/actions/setup-gams@main | |
| with: | |
| version: 29.1.0 | |
| license: ${{ secrets.GAMS_LICENSE }} | |
| - uses: ts-graphviz/setup-graphviz@v2 | |
| # TEMPORARY Work around ts-graphviz/setup-graphviz#630 | |
| if: ${{ ! startswith(matrix.os, 'macos-') }} | |
| - name: Install packages and dependencies | |
| # By default, install: | |
| # - ixmp, message_ix: from GitHub branches/tags per matrix.upstream-version (above) | |
| # - other dependencies including genno: from PyPI. | |
| # | |
| # To test against unreleased code (on `main`, or other branches | |
| # for open PRs), temporarily uncomment, add, or edit lines below | |
| # as needed. DO NOT merge such changes to `main`. | |
| run: | | |
| # pip install --upgrade "genno @ git+https://github.com/khaeru/genno.git@main" | |
| pip install --upgrade "ixmp @ git+https://github.com/iiasa/ixmp.git@${{ matrix.upstream.version }}" | |
| pip install --upgrade "message-ix @ git+https://github.com/iiasa/message_ix.git@${{ matrix.upstream.version }}" | |
| pip install .[docs,tests] ${{ matrix.upstream.extra-deps }} | |
| # TEMPORARY Work around hgrecco/pint#2007, unionai-oss/pandera#1685; | |
| # see https://github.com/khaeru/genno/issues/140 | |
| pip install "pint != 0.24.0" "numpy < 2" | |
| - name: Configure local data path | |
| run: | | |
| mkdir -p message-local-data/cache | |
| mix-models config set "message local data" "$(realpath message-local-data)" | |
| mix-models config show | |
| shell: bash | |
| - name: Run test suite using pytest | |
| run: | | |
| pytest message_ix_models \ | |
| -m "not (ece_db or snapshot)" \ | |
| -rA --verbose --color=yes --durations=20 \ | |
| --cov-report=term-missing --cov-report=xml \ | |
| --numprocesses=auto \ | |
| --local-cache --jvmargs="-Xmx6G" | |
| shell: bash | |
| - name: Upload test coverage to Codecov.io | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| pre-commit: | |
| name: Code quality | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: { python-version: "3.12" } | |
| - name: Force recreation of pre-commit virtual environment for mypy | |
| if: github.event_name == 'schedule' # Comment this line to run on a PR | |
| run: gh cache list -L 999 | cut -f2 | grep pre-commit | xargs -I{} gh cache delete "{}" || true | |
| env: { GH_TOKEN: "${{ github.token }}" } | |
| - uses: pre-commit/[email protected] |