Avoid napari 0.5.0 #1333
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| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| name: tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "*-[0-9]+.*" | |
| pull_request: | |
| branches: | |
| - main | |
| env: | |
| NAPARI_IMAGEJ_TEST_TIMEOUT: 60000 | |
| jobs: | |
| test-pip: | |
| name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, windows-latest, macos-latest] | |
| # NB: [3.11.0, 3.11.2] do not have arm64 macos support | |
| python-version: ['3.8', '3.11.3'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Java 8 | |
| uses: actions/setup-java@v3 | |
| with: | |
| java-version: '8' | |
| distribution: 'zulu' | |
| - name: Setup Qt libraries | |
| uses: tlambert03/setup-qt-libs@v1 | |
| # strategy borrowed from vispy for installing opengl libs on windows | |
| - name: Install Windows OpenGL | |
| if: runner.os == 'Windows' | |
| run: | | |
| git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git | |
| powershell gl-ci-helpers/appveyor/install_opengl.ps1 | |
| # We run headless on CI. This yields issues on Mac, where running Java | |
| # headless will alter the screen size on Python, leading to errors. Adding | |
| # this environment variable prevents Java from modifying the screen size. | |
| - name: Set MacOS environment variables | |
| if: runner.os == 'MacOS' | |
| run: | | |
| echo "AWT_FORCE_HEADFUL=true" >> $GITHUB_ENV | |
| - name: Install napari-imagej | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e '.[dev]' | |
| - name: Test napari-imagej | |
| uses: coactions/setup-xvfb@v1 | |
| with: | |
| run: | |
| bash bin/test.sh | |
| ensure-clean-code: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: 3.9 | |
| # This step ensures that everything is installed | |
| - name: Install code cleaning components | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e '.[dev]' | |
| - name: Lint code | |
| uses: psf/black@stable | |
| - name: Flake code | |
| run: | | |
| python -m flake8 src tests | |
| - name: Check import ordering | |
| uses: isort/isort-action@master | |
| with: | |
| configuration: --check-only | |
| - name: Validate pyproject.toml | |
| run: | | |
| python -m validate_pyproject pyproject.toml | |
| conda-dev-test: | |
| name: Conda Setup & Code Coverage | |
| runs-on: ubuntu-latest | |
| defaults: | |
| # Steps that rely on the activated environment must be run with this shell setup. | |
| # See https://github.com/marketplace/actions/setup-miniconda#important | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if dev-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('dev-environment.yml') }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| # Create env with dev packages | |
| auto-update-conda: true | |
| python-version: "3.10" | |
| miniforge-variant: Mambaforge | |
| environment-file: dev-environment.yml | |
| # Activate napari-imagej-dev environment | |
| activate-environment: napari-imagej-dev | |
| auto-activate-base: false | |
| # Use mamba for faster setup | |
| use-mamba: true | |
| - name: Setup Qt libraries | |
| uses: tlambert03/setup-qt-libs@v1 | |
| - name: Test napari-imagej | |
| uses: GabrielBB/xvfb-action@v1 | |
| with: | |
| run: | | |
| conda run -n napari-imagej-dev --no-capture-output python -m pytest -s -p no:faulthandler --color=yes --cov-report=xml --cov=. | |
| # We could do this in its own action, but we'd have to setup the environment again. | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v2 |