Merge pull request #283 from imagej/index-img-to-roi #333
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "*-[0-9]+.*" | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build-pip: | |
| name: pip - ${{matrix.os}} - ${{matrix.python-version}} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.8", "3.10"] | |
| # Breaks due to https://github.com/jpype-project/jpype/issues/1009 | |
| # Should be included once the fix is released | |
| exclude: | |
| - os: windows-latest | |
| python-version: "3.10" | |
| include: | |
| - os: windows-latest | |
| python-version: "3.9" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{matrix.python-version}} | |
| - uses: actions/setup-java@v3 | |
| with: | |
| java-version: '8' | |
| distribution: 'zulu' | |
| - name: Install PyImageJ | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e '.[dev]' | |
| - name: Test PyImageJ | |
| run: | | |
| bin/test.sh | |
| ensure-clean-code: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| - name: Lint code | |
| uses: psf/black@stable | |
| - name: Flake code | |
| run: | | |
| python -m pip install flake8 Flake8-pyproject flake8-typing-imports | |
| python -m flake8 src tests | |
| - name: Check import ordering | |
| uses: isort/isort-action@master | |
| with: | |
| configuration: --check-only | |
| - name: Validate pyproject.toml | |
| run: | | |
| python -m pip install validate-pyproject[all] | |
| python -m validate_pyproject pyproject.toml | |
| conda-dev-test: | |
| name: Conda Setup & Code Coverage | |
| runs-on: ubuntu-latest | |
| defaults: | |
| # Steps that rely on the activated environment must be run with this shell setup. | |
| # See https://github.com/marketplace/actions/setup-miniconda#important | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if dev-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('dev-environment.yml') }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| # Create env with dev packages | |
| auto-update-conda: true | |
| python-version: 3.9 | |
| miniforge-variant: Mambaforge | |
| environment-file: dev-environment.yml | |
| # Activate pyimagej-dev environment | |
| activate-environment: pyimagej-dev | |
| auto-activate-base: false | |
| # Use mamba for faster setup | |
| use-mamba: true | |
| - name: Test pyimagej | |
| run: | | |
| bin/test.sh tests --cov-report=xml --cov=. | |
| # We could do this in its own action, but we'd have to setup the environment again. | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v2 |