Merge pull request #290 from imagej/i2k-2023-doc-update

Add 3D deconvolution and GLCM texture analysis use case notebooks for I2k 2023
imagej · Oct 19, 2023 · 979499a · 979499a
2 parents f8c7909 + b5e16e2
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diff --git a/doc/Deconvolution.ipynb b/doc/Deconvolution.ipynb
diff --git a/doc/GLCM.ipynb b/doc/GLCM.ipynb
diff --git a/doc/imagej-ops-use-cases.rst b/doc/imagej-ops-use-cases.rst
@@ -0,0 +1,10 @@
+imagej-ops use cases
+====================
+
+These are use cases utilizing the :code:`imagej-ops` framework in PyImageJ workflows.
+
+.. toctree::
+    :maxdepth: 2
+
+    Deconvolution
+    GLCM
diff --git a/doc/index.rst b/doc/index.rst
@@ -32,11 +32,9 @@ scikit-image, CellProfiler, OpenCV, ITK and many more.
    :maxdepth: 3
    :caption: 🔬 Use cases
 
-   Blob detection (interactive) <examples/blob_interactive.rst>
-   Blob detection (headless) <examples/blob_xvfb.rst>
-   CellProfiler <cellprofiler/README>
-   Classic Segmentation <Classic-Segmentation>
-   Puncta Segmentation <Puncta-Segmentation>
+   imagej-ops <imagej-ops-use-cases>
+   Integration <integration-use-cases>
+   Segmentation <segmentation-use-cases>
    other_use_cases
 
 .. toctree::

diff --git a/doc/integration-use-cases.rst b/doc/integration-use-cases.rst
@@ -0,0 +1,9 @@
+Integration use cases
+======================
+
+These are use cases where PyImageJ has been integrated into other platforms/projects.
+
+.. toctree::
+    :maxdepth: 2
+
+    CellProfiler <cellprofiler/README>
diff --git a/doc/segmentation-use-cases.rst b/doc/segmentation-use-cases.rst
@@ -0,0 +1,12 @@
+Segmentation use cases
+======================
+
+These are use cases demonstrating segmentation workflows with PyImageJ
+
+.. toctree::
+    :maxdepth: 2
+
+    Blob detection (interactive) <examples/blob_interactive.rst>
+    Blob detection (headless) <examples/blob_xvfb.rst>
+    Classic Segmentation <Classic-Segmentation>
+    Puncta Segmentation <Puncta-Segmentation>