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insightsengineering · Jun 18, 2024 · d64ef8d · d64ef8d
1 parent d4454e6
commit d64ef8d
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Showing 2 changed files with 25 additions and 41 deletions.
diff --git a/.github/workflows/scheduled.yaml b/.github/workflows/scheduled.yaml
@@ -36,37 +36,21 @@ jobs:
     strategy:
       matrix:
         image:
-          - distro_tag: '4.4.0'
-            bioc: '3.19'
-            distro: rstudio-local
-            origin: rocker
-          - distro_tag: '4.4.0'
-            bioc: '3.19'
-            distro: rstudio
-            origin: rocker
+          # - distro_tag: '4.4.0'
+          #   bioc: '3.19'
+          #   distro: rstudio-local
+          #   origin: rocker
+          # - distro_tag: '4.4.0'
+          #   bioc: '3.19'
+          #   distro: rstudio
+          #   origin: rocker
           - distro_tag: 'latest'
             bioc: 'devel'
-            distro: debian-clang-devel
+            distro: gcc13
             origin: rhub
           - distro_tag: 'latest'
             bioc: 'devel'
-            distro: debian-gcc-devel
-            origin: rhub
-          - distro_tag: 'latest'
-            bioc: 'devel'
-            distro: fedora-clang-devel
-            origin: rhub
-          - distro_tag: 'latest'
-            bioc: 'devel'
-            distro: fedora-gcc-devel
-            origin: rhub
-          - distro_tag: 'latest'
-            bioc: '3.19'
-            distro: debian-gcc-patched
-            origin: rhub
-          - distro_tag: 'latest'
-            bioc: '3.19'
-            distro: debian-gcc-release
+            distro: gcc14
             origin: rhub
 
     # Trigger steps

diff --git a/Dockerfile b/Dockerfile
@@ -36,21 +36,21 @@ COPY --chmod=0755 [\
 RUN ./install_sysdeps.sh ${DISTRIBUTION}
 
 # Install R packages
-RUN ./install_cran_pkgs.R ${DISTRIBUTION} && \
-    ./install_bioc.R ${BIOC_VERSION} && \
-    ./install_bioc_pkgs.R ${DISTRIBUTION} && \
-    ./install_gh_pkgs.R ${DISTRIBUTION} && \
-    ./install_other_pkgs.R ${DISTRIBUTION} && \
-    ./install_pip_pkgs.py ${DISTRIBUTION} && \
-    ./test_installations.sh && \
-    rm -f install_sysdeps.sh \
-        install_cran_pkgs.R \
-        install_bioc.R \
-        install_bioc_pkgs.R \
-        install_gh_pkgs.R \
-        install_other_pkgs.R \
-        install_pip_pkgs.py \
-        test_installations.sh
+RUN ./install_cran_pkgs.R ${DISTRIBUTION}
+RUN ./install_bioc.R ${BIOC_VERSION}
+RUN ./install_bioc_pkgs.R ${DISTRIBUTION}
+RUN ./install_gh_pkgs.R ${DISTRIBUTION}
+RUN ./install_other_pkgs.R ${DISTRIBUTION}
+RUN ./install_pip_pkgs.py ${DISTRIBUTION}
+    # ./test_installations.sh && \
+    # rm -f install_sysdeps.sh \
+    #     install_cran_pkgs.R \
+    #     install_bioc.R \
+    #     install_bioc_pkgs.R \
+    #     install_gh_pkgs.R \
+    #     install_other_pkgs.R \
+    #     install_pip_pkgs.py \
+    #     test_installations.sh
 
 # Run RStudio
 CMD ["/init"]