fix: update teal.modules.general #17
Workflow file for this run
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| --- | |
| name: Check Package Restore 📦 | |
| on: push | |
| permissions: | |
| contents: read | |
| jobs: | |
| main: | |
| name: Check renv restore | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| platform: [linux/amd64, linux/arm64] | |
| directory: | |
| [ | |
| "RNA-seq", | |
| "basic-teal", | |
| "efficacy", | |
| "exploratory", | |
| "longitudinal", | |
| "early-dev", | |
| "patient-profile", | |
| "python", | |
| "safety", | |
| ] | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| - name: Extract R version from lockfile | |
| run: printf 'R_VERSION=%s\n' "$(jq --raw-output .R.Version ${{ matrix.directory }}/renv.lock)" >> $GITHUB_ENV | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ env.R_VERSION }} | |
| - name: Setup system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install --yes \ | |
| libcurl4-openssl-dev \ | |
| libgdal-dev \ | |
| libproj-dev \ | |
| libudunits2-dev | |
| - name: Restore renv from cache | |
| uses: actions/cache@v2 | |
| env: | |
| CACHE_KEY: renv-${{ runner.arch }}-${{ runner.os }}-${{ env.R_VERSION }} | |
| with: | |
| path: renv/library | |
| key: ${{ env.CACHE_KEY }}-${{ hashFiles('renv.lock') }} | |
| restore-keys: ${{ env.CACHE_KEY }}- | |
| - name: Sync renv with lockfile | |
| shell: Rscript {0} | |
| run: | | |
| setwd("${{ matrix.directory }}") | |
| sys.source(".Rprofile") | |
| options(renv.config.cache.symlinks = FALSE) | |
| options(renv.config.install.remotes = FALSE) | |
| renv::restore(clean = TRUE) |