687 fix from formatters na str@main

[Melkiades]

Pull Request

Fixes #687

[edelarua]

LGTM! Thanks @Melkiades

[github-actions]

Unit Tests Summary

       1 files     115 suites   5m 11s ⏱️
   779 tests    779 ✔️ 0 💤 0 ❌
1 176 runs  1 176 ✔️ 0 💤 0 ❌

Results for commit 32aaff6.

♻️ This comment has been updated with latest results.

[edelarua]

@Melkiades I'm not sure why these two tests are failing since you didn't update them. They don't failing when I run them, are they failing for you?

[Melkiades]

@Melkiades I'm not sure why these two tests are failing since you didn't update them. They won't fail when I run them, are they failing for you?

They do fail locally for me. I fixed both here, and I think it was due to an external update of the function stats::ancova. That is difficult to be true, actually. I just checked and the first typo/bug was as it is since at least 2015 anova.R#L36

[github-actions]

Code Coverage Summary

Filename                                   Stmts    Miss  Cover    Missing
---------------------------------------  -------  ------  -------  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R/abnormal_by_baseline.R                      63       0  100.00%
R/abnormal_by_marked.R                        52       5  90.38%   124-128
R/abnormal_by_worst_grade_worsen.R           113       3  97.35%   206-208
R/abnormal_by_worst_grade.R                   37       0  100.00%
R/abnormal.R                                  40       0  100.00%
R/combination_function.R                       9       0  100.00%
R/compare_variables.R                        138       3  97.83%   135, 247, 266
R/control_incidence_rate.R                    10       0  100.00%
R/control_logistic.R                           7       0  100.00%
R/control_step.R                              23       1  95.65%   58
R/control_survival.R                          15       0  100.00%
R/count_cumulative.R                          47       1  97.87%   52
R/count_missed_doses.R                        31       0  100.00%
R/count_occurrences_by_grade.R                79       1  98.73%   148
R/count_occurrences.R                         61       1  98.36%   89
R/count_patients_events_in_cols.R             67       0  100.00%
R/count_patients_with_event.R                 72      22  69.44%   208-231
R/count_values.R                              24       0  100.00%
R/cox_regression_inter.R                     142       0  100.00%
R/cox_regression.R                           318       0  100.00%
R/coxph.R                                    313      91  70.93%   19-43, 151, 158, 178, 181, 225-239, 242-246, 536-540, 585, 598, 607, 616, 623-635, 693-749
R/d_pkparam.R                                405       0  100.00%
R/decorate_grob.R                            167     167  0.00%    158-517
R/deprec-nest_colors.R                         5       5  0.00%    55-59
R/desctools_binom_diff.R                     668     415  37.87%   57, 62, 84-94, 97-98, 119-134, 137-176, 179-186, 196-244, 247-258, 261-273, 276-289, 297, 299, 319, 323, 327, 331, 367, 383, 386, 389, 392, 399, 414-416, 419-422, 432-439, 442-449, 452-453, 455-458, 460-461, 463-464, 468-474, 476, 478-483, 485-486, 490-491, 493-494, 496-499, 502-503, 505-506, 508-509, 514-515, 518-521, 524-529, 532-550, 553-564, 566-581, 585-601, 603-607, 611-643, 645-673, 677-695, 697-703, 712, 714, 727, 731
R/df_explicit_na.R                            30       0  100.00%
R/estimate_multinomial_rsp.R                  47       1  97.87%   53
R/estimate_proportion.R                       97       1  98.97%   264
R/fit_rsp_step.R                              36       7  80.56%   104-110
R/fit_survival_step.R                         36       7  80.56%   85-91
R/formats.R                                   88       1  98.86%   66
R/g_forest.R                                 446      46  89.69%   171, 199, 228, 251-252, 256-257, 325, 338, 342-343, 348-349, 362, 378, 425, 456, 532, 541, 613-633, 636, 647, 704, 707, 833-855, 897-898
R/g_lineplot.R                               192     172  10.42%   163-412, 457, 465, 503-510
R/g_step.R                                    59      30  49.15%   83-120
R/g_waterfall.R                               47      47  0.00%    83-145
R/h_adsl_adlb_merge_using_worst_flag.R        74       0  100.00%
R/h_biomarkers_subgroups.R                    38       0  100.00%
R/h_map_for_count_abnormal.R                  54       0  100.00%
R/h_pkparam_sort.R                            15       0  100.00%
R/h_response_biomarkers_subgroups.R           74       0  100.00%
R/h_response_subgroups.R                     171      12  92.98%   248-261
R/h_stack_by_baskets.R                        65       2  96.92%   96, 143
R/h_step.R                                   180       0  100.00%
R/h_survival_biomarkers_subgroups.R           78       0  100.00%
R/h_survival_duration_subgroups.R            200      12  94.00%   254-266
R/incidence_rate.R                            93       7  92.47%   69-76
R/individual_patient_plot.R                  140     140  0.00%    39-276
R/kaplan_meier_plot.R                        530     107  79.81%   252-256, 308-322, 373-382, 440, 516-522, 579-581, 607-608, 610-612, 620-622, 648, 653-656, 822-843, 1019, 1242-1274
R/logistic_regression.R                      569       3  99.47%   279-280, 347
R/missing_data.R                              20       3  85.00%   29, 61, 71
R/odds_ratio.R                               106      16  84.91%   181-199
R/prop_diff_test.R                            87       0  100.00%
R/prop_diff.R                                177      45  74.58%   56-63, 109, 189, 252, 336-377
R/prune_occurrences.R                         57       0  100.00%
R/response_biomarkers_subgroups.R             59       0  100.00%
R/response_subgroups.R                       164       0  100.00%
R/rtables_access.R                            21       0  100.00%
R/score_occurrences.R                         20       1  95.00%   113
R/split_cols_by_groups.R                      49       0  100.00%
R/stat.R                                      47       0  100.00%
R/summarize_ancova.R                          80       7  91.25%   142-148
R/summarize_change.R                          27       0  100.00%
R/summarize_colvars.R                          6       0  100.00%
R/summarize_num_patients.R                    47       3  93.62%   93-95
R/summarize_patients_exposure_in_cols.R       46       0  100.00%
R/summarize_variables_in_cols.R               64      22  65.62%   35, 37, 65, 67, 92-132
R/summarize_variables.R                      212      19  91.04%   85-102, 477
R/survival_biomarkers_subgroups.R             59       0  100.00%
R/survival_coxph_pairwise.R                   73       9  87.67%   68-76
R/survival_duration_subgroups.R              171       0  100.00%
R/survival_time.R                             47       0  100.00%
R/survival_timepoint.R                       114       7  93.86%   146-152
R/utils_checkmate.R                           68       0  100.00%
R/utils_factor.R                              95       1  98.95%   93
R/utils_grid.R                               111     111  0.00%    39-266
R/utils_rtables.R                             74       2  97.30%   317-318
R/utils.R                                    137      31  77.37%   99-149
R/wrap_text.R                                 64      64  0.00%    30-105
TOTAL                                       8567    1651  80.73%

Diff against main

Filename    Stmts    Miss    Cover
----------  -------  ------  -------
TOTAL       -        -       -

Results for commit: 6e8e93f

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results