-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
453b080
commit 3e63621
Showing
2 changed files
with
366 additions
and
40 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,60 @@ | ||
import ase | ||
import pytest | ||
|
||
|
||
@pytest.fixture | ||
def mock_h2o_molecule(): | ||
"""Create a simple water molecule for testing""" | ||
positions = [ | ||
[0.0, 0.0, 0.0], # O | ||
[0.0, 0.757, 0.586], # H | ||
[0.0, -0.757, 0.586], | ||
] # H | ||
return ase.Atoms("OH2", positions=positions) | ||
|
||
|
||
@pytest.fixture | ||
def mock_h2o_frequencies(): | ||
"""Mock H2O vibrational frequencies in cm^-1""" | ||
# Real vibrational frequencies for H2O | ||
return [ | ||
3657.0, # symmetric stretch | ||
3756.0, # antisymmetric stretch | ||
1595.0, | ||
] # bending | ||
|
||
|
||
@pytest.fixture | ||
def mock_h2o_vibrations(): | ||
"""Mock vibrational normal modes""" | ||
# Simplified normal modes for testing | ||
vibrations = [] | ||
|
||
# Symmetric stretch - both H atoms move in same direction | ||
vibrations.append( | ||
[ | ||
[0.0, 0.0, 0.0], # O stays relatively still | ||
[0.0, 0.0, 1.0], # H1 moves up | ||
[0.0, 0.0, 1.0], # H2 moves up | ||
] | ||
) | ||
|
||
# Antisymmetric stretch - H atoms move in opposite directions | ||
vibrations.append( | ||
[ | ||
[0.0, 0.0, 0.0], # O stays relatively still | ||
[0.0, 0.0, 1.0], # H1 moves up | ||
[0.0, 0.0, -1.0], # H2 moves down | ||
] | ||
) | ||
|
||
# Bending - H atoms move in opposite directions perpendicular to bonds | ||
vibrations.append( | ||
[ | ||
[0.0, 0.0, 0.0], # O stays relatively still | ||
[0.0, 1.0, 0.0], # H1 moves right | ||
[0.0, -1.0, 0.0], # H2 moves left | ||
] | ||
) | ||
|
||
return vibrations |
Oops, something went wrong.